Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00186 ATGGGGAAGAAAGAAGGTAGCTCCTGGTTGACTGCTGTGAAAAGGGCTTTTAGATCTCCTTCAAAAGATGACGAAGAAAAGAAGAGGGAGAAGCGGAGGTGGATTTTCAGAAGACAACAGTCCAATCCACAGGAAATCAAGGTGACCCAAGTGCAAAATCCATTAAAGCCAGCGACTGAAGAGCAGAAGCGTGGCGTCACCGACGTGGTTCGGCTGAACAAGCCCTGTCATGGCGCTAGAGAGCACTACTACGCCATTTTGATACAAACTTCCTTCAGAGGATACCTGGCCAGGAGAGCTCTGCGAGCGCTGAAAGGGCTGGTGAAACTGCAGGCGCTGGTGAGGGGTCACAATGTGAGAAAGCAAGCGAAAATGACCCTTAAATGCATGCAAGCGCTCGTTAGAGTCCAAGCCAGAGTGATAGATCAGCGAATCAAGCTCACCCACGAAACCTCCAATGTCAAATCTGCCATCTGCAACATAAACAGTGCCATAGAATCTCGCTATCTTCGAGACATTTCAGACAGAAAATCCATGTCTCAGTCAAGAGAGGGAAGTAGAAGTAGAATACCTGATCATTTGGATGAACGTTCTCACACAATCGAAGAAGTTAAAGCAATGCTGCAACAGAGGAGAGATCAAATCGCCATTAACCGCGATCGATCCTTGTCACAAGCTTTTTCTCAGCAGATTATGAGAGCTTCGAGGAATCCATCAATGGGAAGCGAATGTGAGCTAGACGACAGACCAAAGTGGCAAGATCAATTAATGAGAAGGAAGCCATGGGAGAGCAGGGGAAGAGCTTCAACTGATCAGAGAGCTGATTCCATCAAAACAGTCGAAATCGACACTTCTCTTCCGTACACATACTTGGCGCCTAATTTCCAAAGAGCACCACAAAATCAGCACAATCTTCAACAAAGACCTAATCCCCACTCTGTTTCTTCTCCAGTCCACCACAGATCCTACAAAAACTTATCCCCCCACAATAATTCCTCTTTCACTCCATCTCCGTCCAAAACCAGACCTCTACTCGTCCGATCTGCCAGCCCTCGCTGCATCAGAGAAGAAAAACACTTCCCAACCTCCCAAACACCAAGCCTCAAGTCAAATTATTACTACAGCACCATTAATTTGCAGAATCAAAGCAGAGGAGGAGGAAGTAGTACGACTGTAAACAACTTGGGAGCTTCGTTTCCGAACTACATGGCAGCGACAGAATCAGCGAAGGCGCGAGTGCGTTCTCAGAGCGCCCCGAAGCAAAGACCGTCAAGACCGTCGACACCGGAGAGGGAAAGAAGCGGATCAGCAAGGAAGCGCCTTAATTTTCCAGCTGTCGAAGGGTACGGAGGTTTGGGGCAGAACCTGAAGGGCCCCTGCTTCAAGAGCGTGAATGAGGAGCATGTGGGGTTAGAGCAGCAGTCCAATTACTCTTCTTGCTGCACGGACAGCTTTGGCTGTGAGATTTCTCCTTCTTCCACGAGTGATCTGAGAAGGTGGCTGAGGTGA 1509 48.44 MGKKEGSSWLTAVKRAFRSPSKDDEEKKREKRRWIFRRQQSNPQEIKVTQVQNPLKPATEEQKRGVTDVVRLNKPCHGAREHYYAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQARVIDQRIKLTHETSNVKSAICNINSAIESRYLRDISDRKSMSQSREGSRSRIPDHLDERSHTIEEVKAMLQQRRDQIAINRDRSLSQAFSQQIMRASRNPSMGSECELDDRPKWQDQLMRRKPWESRGRASTDQRADSIKTVEIDTSLPYTYLAPNFQRAPQNQHNLQQRPNPHSVSSPVHHRSYKNLSPHNNSSFTPSPSKTRPLLVRSASPRCIREEKHFPTSQTPSLKSNYYYSTINLQNQSRGGGSSTTVNNLGASFPNYMAATESAKARVRSQSAPKQRPSRPSTPERERSGSARKRLNFPAVEGYGGLGQNLKGPCFKSVNEEHVGLEQQSNYSSCCTDSFGCEISPSSTSDLRRWLR 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1680055 1681980 + BLOR09916 Blo02g00186 56416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00186 502 MobiDBLite consensus disorder prediction 301 344 - -
Blo02g00186 502 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 502 - -
Blo02g00186 502 ProSiteProfiles IQ motif profile. 105 132 IPR000048 GO:0005515
Blo02g00186 502 MobiDBLite consensus disorder prediction 406 444 - -
Blo02g00186 502 Gene3D - 79 140 - -
Blo02g00186 502 PANTHER IQ-DOMAIN 5-RELATED 1 502 - -
Blo02g00186 502 MobiDBLite consensus disorder prediction 242 278 - -
Blo02g00186 502 MobiDBLite consensus disorder prediction 175 198 - -
Blo02g00186 502 ProSiteProfiles IQ motif profile. 81 109 IPR000048 GO:0005515
Blo02g00186 502 MobiDBLite consensus disorder prediction 233 278 - -
Blo02g00186 502 Pfam IQ calmodulin-binding motif 108 124 IPR000048 GO:0005515
Blo02g00186 502 Pfam IQ calmodulin-binding motif 85 102 IPR000048 GO:0005515
Blo02g00186 502 MobiDBLite consensus disorder prediction 410 424 - -
Blo02g00186 502 MobiDBLite consensus disorder prediction 301 346 - -
Blo02g00186 502 MobiDBLite consensus disorder prediction 1 41 - -
Blo02g00186 502 MobiDBLite consensus disorder prediction 17 38 - -
Blo02g00186 502 Pfam Protein of unknown function (DUF4005) 350 451 IPR025064 -
Blo02g00186 502 SMART iq_5 80 102 IPR000048 GO:0005515
Blo02g00186 502 SMART iq_5 103 124 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00186 - - - qsu:112008332 568.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00186 Blo-Chr2:1680055 Blo09g00004 Blo-Chr9:48272 1.65E-76 dispersed
Blo15g00158 Blo-Chr15:1622332 Blo02g00186 Blo-Chr2:1680055 4.93E-21 dispersed
Blo02g00186 Blo-Chr2:1680055 Blo01g01460 Blo-Chr1:53769300 3.36E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00730 CCT,ECH 65 305 IQD Protein Family AT3G09710 50.8 6.9e-56 215.3
Blo09g00550 BCT 1 468 IQD Protein Family AT5G03040 50.3 7.4e-103 371.3
Blo13g00730 CCT,ECH 1 466 IQD Protein Family AT3G52290 51.1 1.1e-95 347.4
Blo03g01027 . 10 361 IQD Protein Family AT3G22190 57.0 4.0e-79 292.4
Blo01g01460 BCT 1 439 IQD Protein Family AT2G26180 60.9 4.6e-120 428.3
Blo12g01017 BCT 1 431 IQD Protein Family AT2G26180 60.9 1.8e-119 426.4
Blo18g00281 . 414 674 IQD Protein Family AT2G26180 56.3 6.8e-63 238.4
Blo03g01027 . 41 212 IQD Protein Family AT2G26180 61.7 1.1e-41 167.9
Blo16g00006 . 1 274 IQD Protein Family AT2G33990 52.5 5.6e-63 238.0
Blo07g00960 . 83 287 IQD Protein Family AT3G15050 54.1 3.6e-54 208.8
Blo02g00186 . 1 502 IQD Protein Family AT4G00820 50.4 1.5e-110 397.1
Blo05g00074 BCT,CCT,ECH 1 378 IQD Protein Family AT3G16490 50.9 1.0e-68 257.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54