Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00195 ATGGGAAGAGGGAGAGTGGAGCTTAAGAGGATTGAGAACAAAATCAACAGGCAAGTGACCTTCGCAAAGAGAAGAAATGGACTTTTGAAGAAAGCATATGAGCTTTCCGTTCTTTGCGATGCAGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTTGAGAGGTACCAAAAGTGCAACTATGGAGCCCCAGAGCCAAGTGTTTCCACTCGAGAAGCCATGATTCAATCAATGCAGGAGTTGAGCAGCCAACAGGAATATTTGAAGCTTAAAGCACGTTATGATGCTCTACTAAGATCCCAAAGGAACCTTTTGGGTGAAGACCTTGGCCCTCTGAGTAGTAAACAGCTTGAGTCGCTTGAAGGGCAATTGGATTCATCACTCAAACTGATCAGATCAACAAGGACTCAATACATGCTGGATCAGCTCAATGATCTTCAACGCAAGGAACACTTGCTGTGCGAAGCTAACAAAACCCTGAAACAAAGACTGATGGAAGGATATCAAATAAGTTCTCTACAGCTAATTCCAAATGAAGAGGAAGTTGTGTACGATCGTCAACATGCTCAACCTCAGGGAGATGGATTCTTTCATCCCTTGGACTGTGAACCAACTTTGCAAATTGGATATCCGTCTGATCCAATAACAGTAGTCAATGCAGGCCCAAGCCTAAACAATTACATGCCAGCATGGTTACCATGA 744 43.82 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPSVSTREAMIQSMQELSSQQEYLKLKARYDALLRSQRNLLGEDLGPLSSKQLESLEGQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLCEANKTLKQRLMEGYQISSLQLIPNEEEVVYDRQHAQPQGDGFFHPLDCEPTLQIGYPSDPITVVNAGPSLNNYMPAWLP 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1761044 1767936 - BLOR09925 Blo02g00195 56425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00195 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo02g00195 247 ProSiteProfiles K-box domain profile. 94 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo02g00195 247 Pfam K-box region 92 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo02g00195 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo02g00195 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo02g00195 247 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Blo02g00195 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo02g00195 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo02g00195 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo02g00195 247 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Blo02g00195 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 233 - -
Blo02g00195 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Blo02g00195 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Blo02g00195 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00195 Blo-Chr2:1761044 Blo18g00414 Blo-Chr18:4509735 4.71E-100 dispersed
Blo02g00195 Blo-Chr2:1761044 Blo07g00016 Blo-Chr7:341868 3.11E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11992 PF01486 K-box 1.30E-23 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00195 - - tcc:18608957 421.779