Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00198 ATGGCTGAAGGCAAGCTCGATCTGCCTGGTGATCTCCTCTCCTCCAGACCGTCCGATCAACCTTGGACACCAAAAGTTTCAGTGGATGCATCTGGAGGAAATGACGGGGACAAATTGCTATTGGGTTATCTTGACGAGCCAAAAGAGCAAGCCGCATCTGAAAACAGCATTCCTTTGTCTCCTCAGTGGCTCTATGCAAAACCGAGTGAGGCTAAGGATGTGCGTGCTCCTACTCCTGTTTCCCTTGCAAACTCTGCTGATCCCAGTCAGAAGGAGGGTTGGCGACCAGATGGATCTGAAGACAAAAAAGATTGGAGGAGGATAACTACTACTGACAATGAAATTAGTCGGCGCTGGAGAGAAGAGGAAAGAGAAACTGGTTTACTTGGTGGGAGAAGAGATCGTAGGAAAACTGATCGGCGCATTGATAATGTTTCAATCCGAGACACAACTGAAAGTAGATCCCTACCTACCTCAGACCGTTGGCATGATGGTCGTAATGCTGGGCATGATGCTCGGCGTGACAGCAAATGGTCATCTAGATGGGGTCCTGAAGAGAAGGACAAGGAATCTCGGACTGAAAAGCGATTAGATGTAGACAAGGATGATACTCACAATGAGATCCAATCGGTGGGTAACATTCGTTCAACTTCTGAACGTGAGTCCGAGTCTCGTGATAAATGGAGGCCTCGCCACAGGATGGAGGTCCACTCAAGCAGCTCTGCTTGTCACCGAGCTGCACCAGGATTTGGCCTTGAACGAGGACGTGCAGAGGGTTCGAATGTTGGGTTTACCATAGGACGAGGAAGGGCAAATATCATAGGAAGGTTATCTGCTGGCTTGATTGCTGCCCCTCATTTGGATAAAAGTGATCATATCCTTGGGAAATCAAATTATTCAGCTCGCACTTTCTGCTACCCTAGGGGGAAGATTCTTGATATTTATCGAAGCCAAAAACTGAATCCATGTTTTTCTGCCATGCCGGATGAGATGGAAAAGTCACATGCCATAACTCAGTTAGATGCTGTTGAACCATTGGCTTTTATTGCACCAAACGATGTAGAGGAGGCTACTATTAGTGATATTTGGAAAGGAAAGATCAATAGTAGCTGCGTGGGTTATGAATCATATCAAAAAGAGAAATCTCTAGTGCATGTTATAGGTGATGGAGATGTGGAATTTATCGATGGAATTTCAGGAATTCTTCCTTCATCTTTAGCTACTGATATTATTATTGGTGTAGTGGACTCAAAATTAATTATGGAAGAACAAAAAGTTCTGCCTCCAACCATCTGCGAGGATACTGCAGACTCCCTTCGAGATGCTGCATATGGTTATGCAAATAAAGCTGTTGACGAAAATACCATGTGGAATTATGGTTTATTAAGGAATGAAATAAATGAAGAAAGTAATACTCAAAATAAAGATCAGCATGTAGCACCAGTAGGTTGGTCAGATTCAAATGATTTGGCTGCAATTGTTTTTAGAGATAGTGCAGTTCCAAGTGTATCTGAGACTGGTGGTGCTCTCAAAAGTGCTTCACAGACCCATGTTCGTGGTGATGGAAAAATGGAAAATTCTGGGTTCAAGTATAATCTAACCAATGACAATGATGTGGCAAATTCTTTTGGTGTCAATCCCAATCTTCCCGATGATTCAAGTTCTTTTTTTATAATGCCCTCTCTAGAACGGAATCAATTCAGAAACTTTAACACTAAAAATGTAGACAAGGAACCCCCACCTGAGGAGTTTATTTTGTGCTACCTTGATCCTCAGGGGATTATGCAAGGGCCATTCATGGGGGCAGATATTATCTTGTGGTACGAGCAGGGATTTTTTGGGACTGACCTTCCTGTCCGTCTTGCTGATGCTCCTGAAGAGACTCCTTTTCAAAGTTTAGGAGAGGTCATGCCACATTTAAAAAGTTGCACTGGATCTAATAATGTTGCTATATCAAATTCTACTCTTGAGGAAACTAGTGTCCCTTTAAGGAAGTCGGAAGCTATTTTTACTTCTCTTCCCATTCCAGAAACTTCTAATCTATCTACAGTGCATGATCAGATCCTGCCATTGGCTGAGATCCATAAGCTCCCGCAGCACATTTCGTCCAGAATGGACCAAAGCGGTCATGATTTTGTTGTTCAGGATGAAGAAATTGTTTTTCCTGGAAGACCAAGAAGCACTGACTATATTGTTCCAAGGATTTCTGGGGGGATTCCTCTTGGAAACTCAATAACTCAACCTTCATTCTCCGAACAAATTGAGCCATGCTTACCAAGTCAGAATGATAGCAGGATGCACCCGTTTGGTTTAATGTGGTCTGAGCTTGAAAGCGCAAGCTCAAAGCATGCGAAACCTTCTAACATACCAACCAGCATGAATAGGTTTTTACATGGCCAAATGCGTGATCCTGGCCCTGGGAAATCACATGTTAATTCAATTGGAGCTAACAATGTTGTTGATCAGGTGATCTTAGAGCAGCAGTTATTATATGACCTACAACAATGGTCTCATCGAAATTCAAGACATATAGACCCATCTTTCGAGCATTCTATTCACTCAAAATTTGGTCAATTGCCACAACAAGATCATCAAAGAGACTTATTGGAGCTACTATCTCAAACTCAACGGGGAAAAGTGCAGTCCTTGGAACAAATATTGCAACAAGAACAGATGCTTCAGCAAGAACAGATGCAGGGTAGGCATTTGGGGTTGAGACAGCGAACCCCTTTGGAAGATGAGAGGCATGTTGGTTCTATCTGGCCAGGTGATGAGTCAGGTCAGCAGTTTTTCAGGTCTCATCCTGGCCCTCAAAGAGTTCATTCTGCAAACTTTGATTTATATCAGCAACGGAGACCATCACATGATGAACAACTGAACCACCTTGAGCACAATCTTTCATATCAGGATCGTCTTCATCACGGGCCTTATGAGTCTGGATCTTTTCCATTTGAGAGGTCAATGACTTTGCCTTCTGGTACTTCAGAAATTAATTTGGAAGCTGTTAATAGTTTGGCTCGCCCACATGGTTTAGAGATACTTGAGTCAAGTGTACGGATCTCACCAGGCAATCAATTTGGAACATCTGGAGCTGGTATTGGTGCTCATAATTCTCGCCATAATTTAGTATCTAATCACTTTCAAGTTCCTTATTTGGATGGAGCTGAGAGTCATTGGTCTGAGAACAATGATCAACTCCATCATAATCAGGAGATGTTAAATAGGGAGTCAGAATCTAAAATGACTTCTGGAGATTCATCTCTATGGATGTCAGATGGGTTAAATGATGAAAAGTCAAAGCAATTGTTGATGGATTTGCTCAGTCAGAAATCAGTTCAGGCTGCAGAGTCGACTAATGTTTCCAACGGAGTGTCTTATAATAGGATTCTGGCTGGTGTCTATTCTGGATCAAGCACTACAGATCACCCATTCAATCTTCATTCAGACGAAGAAGCTGGTCTAAACAGCTCTTTTCACGTGGGGTCCTATGGTTCGAATACTTGTGAACCATTGCAGGTTCAGCAGCACAGCAGTCTGGGAGGCAAAGAAAAAGTCCCTTATAGATTAGTTTCTGAAGCTTGCATTGATGACAATGCTGCAGGTGTTAAAACCGGTGACATTATATACCCACATTCTAACCCAGTTAGTACACTGTTTGTGAACAAAAAGCTTGTAGATGTAGGAGGTAGAGGCTGCGAGAGTTTGATGAAAAATCAGACTTTTGATATTCAAGAACAAACTCTCGAACTTGGAGGGTTGGGTGCCACAGATCATGGAGGGATTCTAAACAGTGCCCTTGGTAGGCACTCTTCTCTTGGATCTACTGGCTTTAATAGCAAGATTGGCATGTGCAATTCATTACCCGGAGATATTGCTAAAGATCATGCTGTGAGTCTGGATGAGCAGAAGGCCGAGGAACACGAAGTTGAAGTAGAAGTGAGCAAAGAAGTTGGATCCGAACAAGAAGAAGTTCTGATTCTGCCAGAAAAAGTGGCAGCATCAGAATTCTATCATGTTCAGCTGACATCAACTGTTGGCAAAGAAAAAATTACGGAGAAAGATGGTGAAGGGTTGCACGTGAAGATCGATAGGTCGAGGGTCACTGTTCTCTCCAAAGACACTATTTTGTTGAGGCGCCCTCCAGTCCCACGGACTATGTCATCTCAAGAAGGATTTGCGGAAATCGTTTCTGATTCAGTCAGAGGGAAGGACGATGGTAATTATCCTGAACAATACGGCATTATAAGTTCAGATACGTCGAATACTTCTGGGAAGAAGGAGATGCGATTTCGACGCATATCATCAGGAAGTGATGTGGAGGTGTCGGAGGCATCGTTTATAGACATGCTGAAGAAGAGTGCACCCGCTGAAGCCCACCCTGCTGCAGCAATTTCTGAGCCAATGGACGGATCACAAGCAGGGAAAGGAGGGAAGAAGAAAGCAAAAAAGGGGCGGCAAATCGATCCGGCATTGCTTGGTTTCAAAGTCACGAGTAACCGAATAATGATGGGCGAGATACAGCGGGTAGACGATTGA 4536 43.32 MAEGKLDLPGDLLSSRPSDQPWTPKVSVDASGGNDGDKLLLGYLDEPKEQAASENSIPLSPQWLYAKPSEAKDVRAPTPVSLANSADPSQKEGWRPDGSEDKKDWRRITTTDNEISRRWREEERETGLLGGRRDRRKTDRRIDNVSIRDTTESRSLPTSDRWHDGRNAGHDARRDSKWSSRWGPEEKDKESRTEKRLDVDKDDTHNEIQSVGNIRSTSERESESRDKWRPRHRMEVHSSSSACHRAAPGFGLERGRAEGSNVGFTIGRGRANIIGRLSAGLIAAPHLDKSDHILGKSNYSARTFCYPRGKILDIYRSQKLNPCFSAMPDEMEKSHAITQLDAVEPLAFIAPNDVEEATISDIWKGKINSSCVGYESYQKEKSLVHVIGDGDVEFIDGISGILPSSLATDIIIGVVDSKLIMEEQKVLPPTICEDTADSLRDAAYGYANKAVDENTMWNYGLLRNEINEESNTQNKDQHVAPVGWSDSNDLAAIVFRDSAVPSVSETGGALKSASQTHVRGDGKMENSGFKYNLTNDNDVANSFGVNPNLPDDSSSFFIMPSLERNQFRNFNTKNVDKEPPPEEFILCYLDPQGIMQGPFMGADIILWYEQGFFGTDLPVRLADAPEETPFQSLGEVMPHLKSCTGSNNVAISNSTLEETSVPLRKSEAIFTSLPIPETSNLSTVHDQILPLAEIHKLPQHISSRMDQSGHDFVVQDEEIVFPGRPRSTDYIVPRISGGIPLGNSITQPSFSEQIEPCLPSQNDSRMHPFGLMWSELESASSKHAKPSNIPTSMNRFLHGQMRDPGPGKSHVNSIGANNVVDQVILEQQLLYDLQQWSHRNSRHIDPSFEHSIHSKFGQLPQQDHQRDLLELLSQTQRGKVQSLEQILQQEQMLQQEQMQGRHLGLRQRTPLEDERHVGSIWPGDESGQQFFRSHPGPQRVHSANFDLYQQRRPSHDEQLNHLEHNLSYQDRLHHGPYESGSFPFERSMTLPSGTSEINLEAVNSLARPHGLEILESSVRISPGNQFGTSGAGIGAHNSRHNLVSNHFQVPYLDGAESHWSENNDQLHHNQEMLNRESESKMTSGDSSLWMSDGLNDEKSKQLLMDLLSQKSVQAAESTNVSNGVSYNRILAGVYSGSSTTDHPFNLHSDEEAGLNSSFHVGSYGSNTCEPLQVQQHSSLGGKEKVPYRLVSEACIDDNAAGVKTGDIIYPHSNPVSTLFVNKKLVDVGGRGCESLMKNQTFDIQEQTLELGGLGATDHGGILNSALGRHSSLGSTGFNSKIGMCNSLPGDIAKDHAVSLDEQKAEEHEVEVEVSKEVGSEQEEVLILPEKVAASEFYHVQLTSTVGKEKITEKDGEGLHVKIDRSRVTVLSKDTILLRRPPVPRTMSSQEGFAEIVSDSVRGKDDGNYPEQYGIISSDTSNTSGKKEMRFRRISSGSDVEVSEASFIDMLKKSAPAEAHPAAAISEPMDGSQAGKGGKKKAKKGRQIDPALLGFKVTSNRIMMGEIQRVDD 1511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1796365 1806889 - BLOR09928 Blo02g00198 56428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00198 1511 MobiDBLite consensus disorder prediction 93 208 - -
Blo02g00198 1511 MobiDBLite consensus disorder prediction 1 40 - -
Blo02g00198 1511 SUPERFAMILY GYF domain 577 641 IPR035445 -
Blo02g00198 1511 CDD GYF 583 641 IPR003169 GO:0005515
Blo02g00198 1511 SMART gyf_5 584 639 IPR003169 GO:0005515
Blo02g00198 1511 PANTHER GYF DOMAIN-CONTAINING PROTEIN 794 1300 - -
Blo02g00198 1511 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1342 1511 - -
Blo02g00198 1511 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 795 - -
Blo02g00198 1511 MobiDBLite consensus disorder prediction 218 239 - -
Blo02g00198 1511 MobiDBLite consensus disorder prediction 1457 1486 - -
Blo02g00198 1511 MobiDBLite consensus disorder prediction 69 247 - -
Blo02g00198 1511 PANTHER GYF DOMAIN-CONTAINING PROTEIN 794 1300 - -
Blo02g00198 1511 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1342 1511 - -
Blo02g00198 1511 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 795 - -
Blo02g00198 1511 Pfam GYF domain 588 633 IPR003169 GO:0005515
Blo02g00198 1511 Gene3D - 570 659 IPR035445 -
Blo02g00198 1511 ProSiteProfiles GYF domain profile. 583 634 IPR003169 GO:0005515
Blo02g00198 1511 MobiDBLite consensus disorder prediction 1406 1427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00198 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein - qsu:112017475 754.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01558 Blo-Chr1:55348695 Blo02g00198 Blo-Chr2:1796365 2.09E-16 dispersed
Blo02g00198 Blo-Chr2:1796365 Blo13g00623 Blo-Chr13:28704264 7.87E-23 dispersed
Blo02g00198 Blo-Chr2:1796365 Blo07g00014 Blo-Chr7:296908 1.90E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1304 . . . . Bpe13g00818 . . . . . . . . . . . . . . . . . . . Cla06g00177 Cam06g0034 Cec06g0196 Cco06g0191 Clacu06g0193 Cmu06g0187 Cre06g0959 . . . . . . . . Blo02g00198 . . . Bpe14g00803 . . . . . . . . . . . . Bhi12g02418 . . . Hepe03g1143 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00198 Blo_Chr02 FPKM 15.234282 15.962698 2.597496 2.021458 9.62026 8.295643 10.324874 0.0 0.0 0.240912