Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00204 ATGGTTCCTTCTCAAAATCGTTATTTCCAGAAAGCTATTTGTTATGGTGGTTGTGGAGCAGAAACTTTAGGTCTGGTGATGAATCGGGTAGAAGGGTATGATCAGTTTAATCACAGTACTGAATCTGGGTTAAGATCTGAGTTTCTTGCTGCTCCAATGGCAGAAGGTGAATCAAGAACAAACAGTGATCTAAAAGATGGAAGCTCCAGCTCTAAAGAAGCTAACGATAAAGAAAAAGATGAAGAATGGCTGCAATTAACTGTAGGATCATCATCTGGTCAAAAAGATGAGCCAGAAGCTCGAAGAAATTCGAGTTTGGTCGAGCTCGATCTGTTACCAGTTGGTAGGTCAAAGCTACCATTAGAACAAGATCAAGCAGGTCCCTCTTTAATTTCTCCTCATCTTCTTCATTTCCCTGAATTTAAATCTCCAGTTTGGCCAATTTCTAACACGAACTCCATTGCAAGTTCTTCAAATTTCATCCCTCCTCCATCTGCGTATTTCAGTAACTCCTCCAGCTTTCATCACCAAGAGATTAACTGGGCGTTTAGGCCATTTCCTCTTAAAGTAGGATCGCTTTCTTCTTCTGCTTCTTATTCTTCGTCGTCTTCCTCTTCTTTCCTACAAATGGGCCCCTATTTTTCCGGTCCGCCATTGATCCAACTCCAGACGTCGCCAAGTTCTGATTTTCGAGTCATCGATCCTCCTCGTAGACCCCATTCGGGAATTTGGTTCACTCTTCAAGCATCAGAATACCAATCGGGAGAACCCTTTTTGCCTCAAATATCAAAAAGCTACCTGCGAATCAAAGATGGAAGGATGACAGTTCGATTGGTGATGAAATATCTGGCTAACAAGCTGAGATTGGAGAGTGAATCAGAGGTGGAGATAACATGCAGAGGGCAGAAGCTCGAACCGTCGTCAGCATTGCAGCATGTAAGAGACAGCATATGGAGTCCAAGAAACGCTGTCGTTTTGATGCCAAACTCCTCCAGTTCATCAGATCATGTAATGGTCTTGCATTATGGCCAAAAAAAAAGAAAAAAACCTCCTCCGCCCTCCATAAATGGAGAGAAAGAAGGACGAGTTGTTACGAGCTTTCCAAGTGACTCAGTGGGCGTTACTAACTCAATGGAAATTGCAATGGCAATGGCTACTTCTTCTGACTATGCTATGGCTGTTCCAGGACTAAATGGATTGATGATAAGGTTTCTCTTTGAGAAGCAATTACAGAAGAGCGATGTCAATGCAGCTGGAAGAATTGTCATTCCTAAGAGAGTGGCTGAACTTCATCTTCCTCCCCTGCATGCAAAGGAGGGCATTTGGATGCATTTTGATGACATGGATTATCTCAAAGTTTGGACCTTCAAATTCAGGTTTTGGCCAAATAACAGTAGTAGGATGTACATTTTTGAGAATACGAAGTCCTTTATTACCGGGTTTGATTTGAAGATAGGAGACTTCTTCATGGTGTTTATAGATGATCGCACTAAGTCATATCTCATACGATCAAGGAGGAACCCTGATGAATTATTCTTCCATGAAGAAATAGTCCAACCAAATATCGCCTTCAATGGCAGAATCTCTGCATCACCTATCATCCAACCCCCAGAAAGCTCCTCTCTTTATTACGAGGACGAAGGACCTTCTTCGATGGTGGCCTTTGGCGAGCTCGATGAAGAGCCGCAGTTCTCCCACCTTGTTCGTTCGACAAGCTTCGAATCCATCGACTTCTCTGATTTCTTCGAATGA 1752 42.81 MVPSQNRYFQKAICYGGCGAETLGLVMNRVEGYDQFNHSTESGLRSEFLAAPMAEGESRTNSDLKDGSSSSKEANDKEKDEEWLQLTVGSSSGQKDEPEARRNSSLVELDLLPVGRSKLPLEQDQAGPSLISPHLLHFPEFKSPVWPISNTNSIASSSNFIPPPSAYFSNSSSFHHQEINWAFRPFPLKVGSLSSSASYSSSSSSSFLQMGPYFSGPPLIQLQTSPSSDFRVIDPPRRPHSGIWFTLQASEYQSGEPFLPQISKSYLRIKDGRMTVRLVMKYLANKLRLESESEVEITCRGQKLEPSSALQHVRDSIWSPRNAVVLMPNSSSSSDHVMVLHYGQKKRKKPPPPSINGEKEGRVVTSFPSDSVGVTNSMEIAMAMATSSDYAMAVPGLNGLMIRFLFEKQLQKSDVNAAGRIVIPKRVAELHLPPLHAKEGIWMHFDDMDYLKVWTFKFRFWPNNSSRMYIFENTKSFITGFDLKIGDFFMVFIDDRTKSYLIRSRRNPDELFFHEEIVQPNIAFNGRISASPIIQPPESSSLYYEDEGPSSMVAFGELDEEPQFSHLVRSTSFESIDFSDFFE 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1864512 1881591 + BLOR09934 Blo02g00204 56434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00204 583 Gene3D - 402 515 IPR015300 -
Blo02g00204 583 PANTHER RING FINGER PROTEIN 13 347 IPR044171 GO:0007275
Blo02g00204 583 SUPERFAMILY DNA-binding pseudobarrel domain 404 502 IPR015300 -
Blo02g00204 583 MobiDBLite consensus disorder prediction 53 104 - -
Blo02g00204 583 Gene3D - 213 342 - -
Blo02g00204 583 MobiDBLite consensus disorder prediction 69 84 - -
Blo02g00204 583 MobiDBLite consensus disorder prediction 343 362 - -
Blo02g00204 583 CDD B3_DNA 404 502 IPR003340 GO:0003677
Blo02g00204 583 PANTHER RING FINGER PROTEIN 13 347 - -
Blo02g00204 583 SMART B3_2 406 508 IPR003340 GO:0003677
Blo02g00204 583 Pfam B3 DNA binding domain 406 503 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00204 - - - pvy:116137920 295.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00204 Blo-Chr2:1864512 Blo18g00545 Blo-Chr18:7632504 7.24E-34 dispersed
Blo02g00204 Blo-Chr2:1864512 Blo10g00609 Blo-Chr10:18598301 2.84E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1339 . . . . Bpe13g00826 . . . . . . . . . . . . . . . . . . . Cla06g00162 Cam06g0051 Cec06g0181 Cco06g0174 Clacu06g0175 Cmu06g0170 Cre06g0944 . . . . . . Chy11g01826 Cme11g02361 Blo02g00204 . . . . . . Bma06g01330 Sed09g0330 . . . . . . . . Bhi12g02396 Tan06g1449 Cmetu11g2046 . Hepe03g1165 . . . . . . . . . . . Chy07g01536 Cme07g01979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002377 1 2 1 2 1 2 3 2 2 2 2 2 4 2 2 4 2 0 3 2 2 2 2 2 2 2 2 3 2 1 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11995 PF02362 B3 8.20E-10 CL0405 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00204 Blo_Chr02 FPKM 36.556217 45.169624 56.282398 48.942417 51.168766 49.830948 55.348663 63.69138 69.693771 74.487839