Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00208 ATGTTTATATTATGGACTTGGAATGGCTTAAAGAATGTTAATTGCAAAAAATTTTCTCTTGGTAGTGAAGGGCTCGGAGAGTTTTATGATGGAGACATTGCCTTTGCAAGTGCCCTGGAAACTTTTGGTGGAGGGCATAATGATCCCATAAGTGTGGCCTTTGGAGGCCCTGTTATGACCAAATTTACGATTGCTCTGAGGGAAATTGGGACATACAAGGAAGTTCTTCGGTCCCAGGTGGAGCATATGTTAAATGACAGATTGCTACACTTCGTTAATATTGATTTGCATGAGGTGAAGGAGGCAAGAAAACGATTTGATAAGGCTAGCCTTCTTTATGACCAGGCACGTGAGAAGTTTTTGTCGCTGAGGAAGGGCACTAAAAATGATGTAGCTACACTTTTGGAAGAGGAACTTCACAGTGCAAGATCTTCCTTTGAGCATTCTCGCTTTAATTTGGTAACTGCTCTTTCTAATGTTGAGGCCAAGAAAAGGTTTGAATTTTTGGAAGCAGTGAGTGGGACGATGGATGCACATCTCCGATACTTCAAACAGGGGTATGAGCTGTTACATCAAATGGAGCCATACATTAATCAGGTATTGACTTATGCTCAACAGTCACGAGAAAGATCCAACTATGAGCAAGCAGCTCTCAACGAAAGGATGCAAGAGTACAAAAGGCAGGTCGATCGAGAGAGTAGGTGGTCTTCCAATGGCTCTAACGGATCTCCAAATGGAGATGGTATACAAACCATTGGTAGAAGTTCGCATAAAATGATAGAGGCAGTAATGCAATCTGCTGCGAGGGGAAAGGTTCAAACCATTCGACAGGGCTATCTCTCAAAACGGTCGTCAAACTTGAGAGGTGACTGGAAAAGAAGATTTTTTGTTCTTGATAGTCGTGGCATGTTGTATTATTATCGAAAACAGTGCATCAAACCATCAGGTAACTCAGGTCAACTAACCAATCAGAGGAATAGTTCTGAGATTGGATCTGGACTACTCAGCCGCTGGCTTTCTTCGCATTATCATGGTGGAGTACATGATGAGAAATCTGTTGCACATCACACTGTGAACTTGCTAACATCAACAATCAAAGTTGACGCCGACCAATCAGATCTTAGGTTTTGCTTCAGGATCATTTCACCTACAAAAAATTACACTCTGCAGGCAGAGAGTGCAATGGATCAAATGGATTGGATTGAGAAAATAACAGGAGTTATTGCTTCTTTACTTAGTTCTCAGGCTCCTGAGAGGTGTTTATCAGCTAGTCCCATGGGAAGTGGCCATGAACGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCTGATTTTGATCATACTGCAATTGAAGAATTTACGAACGAGAGGAGCTTGTCTTCTTCTCATCATGATCGCCCATCCAGGAATTTGCTACAGCAACGGTCCTGTTTAAAAATTGAGAAGCCTATTGATGTACTGAGAAAAGTTTGCGGGAATGATAAATGTGCTGATTGTGGTGCCCCTGAACCAGATTGGGCATCTTTAAACCTAGGAGTTCTTGTTTGCATTGAATGCTCCGGCGTTCACCGTAATCTTGGTGTACACATATCGAAGGTAAGATCTCTAACATTGGATGTCAAAGTATGGGAGCCTTCTGTTATCAGCTTATTTCAGTCTCTTGGCAATACCTTTGCCAACTCTGTGTGGGAGGAGCTGTTGCAATCAAGAAGTGCTTTTCAGGTTGATCTTGCCTCCACAGGGTTTTACAAATCTGATAAACAGCAGTTGCTTTTCATCAACAAACCCAATCATTCTGATTCTATATCAATAAAGGAGAAATTCATCCATGCGAAGATGTTGGATGTGAATGTGTATTCTTTTTTACCCCAGTATGCAGAAAAGCTTTTTGTTCGTAAGCCAAAAGACAATCAATACCCTCACTTAGTTGCACTACAAATGTGGGAGGGCGTACGCTCTAATGACAAGAAAGCCGTTTATCGTCACATTGTCAACTCCGAGACAGACATGAATACTGTGTATGACCAAGCTTCATGGGGGTCTTTATCTCTTGCTAAAGCAACTCTTTTGCAAGACAACACAGGCCTTCAACATGGGTCTTGTTACATGCCCCGTGATGGGATTGACAGAACTTCCAGTAGCTCTTTGAATTTTGGAGGTGCTAGTGAAAGCCAGACCATGGAGGATCTAGATGGACGCACACTCTTGCACCTTGCTTGTGAAAACTCTGACATTGGGATGATTGAGCTTCTCCTGCAGTATGCTGCCAATATAAACGCTATCGACTCAAGAGGTCAAACTCCACTTCACTTGTGTGTCCTTAAAGGCAAAACTGCATTTGCAAAGTTACTTCTTACAAGTTGGAAGATAACCAAAGACCCTAAAGAGGCCGAAGCCAAACTTGCTCAGCTCCGCAGAGACTATGCTAAACAGGTTAAAAACCTCCGTAAAGAGTACATCGAAGAGGTTGAGCTCATGAGGCTTGAGAAGCAACGGAAGGACGAGGGTAGGAGAGAGGCTCTTAGGGTTGCCAATGAGGAGCGTAAAAAGCTCAAGGACGCAGCTGCCAAAGTTAGAGCCGAAGAACGGAAGACGATCCAGGAAGAGCTTCGCCAAACCATTCTGAAAGAAAGAGCTGGAAAACTTGAACATTGGAGGATGAAGGAAAAGTTGAGAGAAGAAAAGAAAAAAGAAAAGAACGAGCTATTGCGTCGAAAAAGTTCCCTGTGGATCGATGAATCTAAACTGGAGAAGAAAATATTGGATGCCATAACCGATTCCAGATCTCTCTGA 2793 42.71 MFILWTWNGLKNVNCKKFSLGSEGLGEFYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHFVNIDLHEVKEARKRFDKASLLYDQAREKFLSLRKGTKNDVATLLEEELHSARSSFEHSRFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQTIGRSSHKMIEAVMQSAARGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCIKPSGNSGQLTNQRNSSEIGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAMDQMDWIEKITGVIASLLSSQAPERCLSASPMGSGHERSASESSSFESSDFDHTAIEEFTNERSLSSSHHDRPSRNLLQQRSCLKIEKPIDVLRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLASTGFYKSDKQQLLFINKPNHSDSISIKEKFIHAKMLDVNVYSFLPQYAEKLFVRKPKDNQYPHLVALQMWEGVRSNDKKAVYRHIVNSETDMNTVYDQASWGSLSLAKATLLQDNTGLQHGSCYMPRDGIDRTSSSSLNFGGASESQTMEDLDGRTLLHLACENSDIGMIELLLQYAANINAIDSRGQTPLHLCVLKGKTAFAKLLLTSWKITKDPKEAEAKLAQLRRDYAKQVKNLRKEYIEEVELMRLEKQRKDEGRREALRVANEERKKLKDAAAKVRAEERKTIQEELRQTILKERAGKLEHWRMKEKLREEKKKEKNELLRRKSSLWIDESKLEKKILDAITDSRSL 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1905689 1916927 - BLOR09938 Blo02g00208 56438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00208 930 ProSiteProfiles Ankyrin repeat region circular profile. 731 762 - -
Blo02g00208 930 Coils Coil 837 864 - -
Blo02g00208 930 Pfam Ankyrin repeats (many copies) 732 785 IPR002110 GO:0005515
Blo02g00208 930 Coils Coil 798 829 - -
Blo02g00208 930 CDD BAR_SFC_plant 15 196 IPR035670 -
Blo02g00208 930 SUPERFAMILY PH domain-like 221 408 - -
Blo02g00208 930 PANTHER CENTAURIN/ARF 15 787 IPR045258 GO:0005096
Blo02g00208 930 SUPERFAMILY Ankyrin repeat 727 786 IPR036770 -
Blo02g00208 930 PRINTS HIV Rev interacting protein signature 512 529 IPR001164 GO:0005096
Blo02g00208 930 PRINTS HIV Rev interacting protein signature 493 512 IPR001164 GO:0005096
Blo02g00208 930 PRINTS HIV Rev interacting protein signature 535 556 IPR001164 GO:0005096
Blo02g00208 930 Coils Coil 888 908 - -
Blo02g00208 930 Pfam PH domain 275 408 IPR001849 -
Blo02g00208 930 ProSiteProfiles Ankyrin repeat profile. 764 785 IPR002110 GO:0005515
Blo02g00208 930 SMART 5bar 1 199 IPR004148 GO:0005515|GO:0005737
Blo02g00208 930 SUPERFAMILY ArfGap/RecO-like zinc finger 481 580 IPR037278 -
Blo02g00208 930 CDD PH_ACAP 276 413 - -
Blo02g00208 930 Gene3D - 668 821 IPR036770 -
Blo02g00208 930 ProSiteProfiles Ankyrin repeat profile. 731 763 IPR002110 GO:0005515
Blo02g00208 930 SMART ANK_2a 731 760 IPR002110 GO:0005515
Blo02g00208 930 SMART ANK_2a 764 796 IPR002110 GO:0005515
Blo02g00208 930 SUPERFAMILY BAR/IMD domain-like 25 296 IPR027267 -
Blo02g00208 930 Gene3D Arfaptin homology (AH) domain/BAR domain 13 232 IPR027267 -
Blo02g00208 930 Pfam BAR domain of APPL family 57 213 - -
Blo02g00208 930 Coils Coil 99 119 - -
Blo02g00208 930 CDD ArfGap 484 612 - -
Blo02g00208 930 Coils Coil 208 228 - -
Blo02g00208 930 MobiDBLite consensus disorder prediction 234 252 - -
Blo02g00208 930 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 15 787 - -
Blo02g00208 930 ProSiteProfiles Ankyrin repeat region circular profile. 764 785 - -
Blo02g00208 930 ProSiteProfiles ARF GTPase-activating proteins domain profile. 481 564 IPR001164 GO:0005096
Blo02g00208 930 ProSiteProfiles PH domain profile. 273 409 IPR001849 -
Blo02g00208 930 SMART arf_gap_3 481 600 IPR001164 GO:0005096
Blo02g00208 930 MobiDBLite consensus disorder prediction 227 252 - -
Blo02g00208 930 Gene3D - 266 421 IPR011993 -
Blo02g00208 930 MobiDBLite consensus disorder prediction 422 442 - -
Blo02g00208 930 Pfam Putative GTPase activating protein for Arf 484 571 IPR001164 GO:0005096
Blo02g00208 930 SMART PH_update 274 411 IPR001849 -
Blo02g00208 930 MobiDBLite consensus disorder prediction 428 442 - -
Blo02g00208 930 Gene3D Arf GTPase activating protein 461 620 IPR038508 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00208 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - qsu:111988141 1256.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00208 Blo-Chr2:1905689 Blo03g01420 Blo-Chr3:40778959 3.16E-23 dispersed
Blo06g01042 Blo-Chr6:33722208 Blo02g00208 Blo-Chr2:1905689 7.23E-17 transposed
Blo07g00007 Blo-Chr7:126452 Blo02g00208 Blo-Chr2:1905689 1.67E-71 transposed
Blo02g00208 Blo-Chr2:1905689 Blo07g00006 Blo-Chr7:109092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1342 . . . Bda11g00373 Bpe13g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00226 . . Blo02g00208 . . Bda11g00373 Bpe14g00814 . . Bma06g01328 . . . . . . . . Cpe03g01178 . . . . . . . . . . . . . . . . Chy07g01544 Cme07g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004542 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00208 Blo_Chr02 FPKM 542.494446 563.631104 1113.901245 1070.011353 331.417755 298.955688 329.532349 881.190002 1012.808044 946.026123