Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00210 ATGCGTAGATTGTATAAGTTGCTGATATCCTACTCCATTTTCTCTGGCAACCATTTCTCTTCTCAGCTGAGGATCAGCCACCCGCTACCACACAATCTCTTCCGAAGGTCGTCTTCTTCCTCTTCCGCCTTCTGCCGAAGCTTCGTTCCCATGGCCGCAACTGAGGAATTGCTTCGCAATACTTTAGCTGAAAAGCAATCGGCTGTACACGATCAAGGCAACGCTGTGAGAGCTCTGAAAGCATCCGGTGGTACTAAGCCCGAAATTGACGCTGCGATTGATGCCTTGAATGCGTTGAAGTTAGAAAAAGCTTCGGTTGAGAGGCAACTGCAAGCGATCATTGCTGGCGCGGGGGGTGATGGCTCTGTTAGCAAGGAAGCGTTTCGTCAAACAGTGGCTAATACTCTAGAACGGCGTTTGTTTTATATTCCAGCGTTCAAGATTTATCGCGGGGTTGCTGGATTATACGATTATGGGCCTCCAGGTTGCGCCGTTAAGTCCAATGTCCTTGCATTCTGGCGTCAGCATTTTGTTCTCGAGGAAAATATGTTGGAAGTTGACTGCCCCTGTGTCACACCTGAGGTTGTTCTGAAGGCTTCTGGTCATGTTGATAAATTCACGGACCTTATGGTGAAAGATGAGAAGACAGGGACCTGCTTCCGTGCTGATCACTTGATTAAGGATTTTTGTAATGAGAAACTTCAGAAAGACCTCACTATCACTTCCGACAAAACAGCTGAGCTAAAACATACACTTGCCGTCTTGGATGACCTCTCAGCTGAAGATTTAGGTGCAAAAATTAAGGAGTACGGAATTACTGCCCCAGACACAAAGAATCCATTGTCTGCTCCTTATCCATTCAACTTAATGTTTCAAACATCAATTGGTCCATCTGGTCTGAACCCTGGATATATGCGCCCTGAAACTGCACAAGGCATATTTGTCAATTTTAAAGATCTGTACTATTACAATGGGAACAAGCTTCCCTTTGGAGCAGCACAAATTGGTCAAGCTTTTAGGAACGAGATATCTCCTCGTCAAGGTCTTCTTAGAGTCCGTGAGTTCACACTGGCAGAGATTGAGCATTTTGTTGATCCAGAAGACAAGTCTCACCCAAAATTCTCTGATGTTGCAAATTTGGAGTTTTTGATGTTTCCAAGAGAAGAACAAATGTCTGGTAACTCAGCAAAGAAAATCCCTCTGGGTGAAGCAGTTGGAAGGGGAATTGTGAACAATGAAACTCTTGGCTATTTCATTGGAAGAGTATATTTATTCCTAACTCACCTTGGTATAGACATAGATCGTTTACGGTTCCGGCAGCACCTTGCAAATGAAATGGCTCATTATGCAGCAGACTGTTGGGATGCTGAAATTGAGTGTTCCTATGGCTGGATTGAGTGTGTTGGTATTGCAGATAGATCCGCCTATGACTTGCGTGCTCATTCGGAGAAAAGTGGTGTCCTCCTTGTGGCGCAAGAAAAATTTTCAGAACCTAGAGAAGTTGAGAAATTGATCATAGCTCTAGTCAAGAAAGAACTAGGCCTTGCTTTTAAGGGTAACCAAAAGAATGTCGTTGAAGCTTTGGAGGCTATGGATGAAGAAGAAGCCTTCAAAATGAAGGCAACTCTTGAATCAGATGGGGAGGTGGAGTTTTACGTGTGTACACTTGGGAAAAATGTTTGTATAAAAAAGAACATGGTTGCGATCTCAAAGGAGAAAAAAAAGGAACATCAAAGGGTATTCACTCCTTCTGTGATCGAACCTTCCTTTGGTATTGGAAGGATAATCTACTGCCTCTTTGAGCATTCTTACTACATGAGGCCTAGTAAGGCTGGCGATGAACAGTTGAATGTGTTTCGGTTTCCACCTCTTGTTGCACCAATTAAATGCACAGTTTTCCCTCTGGTTCAGAATCAACAGTACGAGGATGTTGCTAAAGTTATTTCCAAATCACTGACTGTAGCTGGTATCTCACATAAGATTGACATCACAGGCACCTCAATTGGCAAACGATATGCAAGAACCGATGAGCTTGGTGTACCGTTTGCCATCACGGTAGATTCAACAACTTCAGTTACCATCCGGGAAAGGGATAGCAAAGATCAAATCCGGGTTAACGTGGTTGAAGCTGAGATGGACAAACTGATAGTACGAGAAGCTGGGTGGTTCCAGCAAGTTTGGAGCTTTGAAGCAGCCATGGCTATGAGGTTCTATGCATTAGCAGCCTTAAGTAAAGAATTCTCAGGAAATGGAGTTGCTTCAAAAGACAGAACGAAACATACTTATTTCTCAGGGTTTTCGTCAGAATCCCTCACTTCTGGACATGATTTGGGTCTGATTTCAGAGCTCCCTGCCACAGTGGCAGCTGTAAAGAACCCTACCTCTAAAATTGTTTATGATGAATACAATCATGAGCGTTTTCCTCCTGGTGACCCCAGCAAGCGTGCTTTTGCATATTTTGTTTTGACTGGAGGCAGGTTCGTGTATGCGTCTTTGATCCGCCTGCTGATTCTTAAGTTTGTTCTGAGCATGTCAGCTAGCAAAGATGTTCTTGCCCTTGCATCCCTTGAGGTTGACCTGTCCAGCATTGAGCCTGGTACAACAGTTACTGTCAAGTGGAGAGGGAAGCCAGTCTTCATTAGGCGTAGAACCGAAGATGACATTAATTTGGCCAACAGTGTAGATGTTGGAACTCTTCGGGATCCACAAGAGGATTCAGAGCGGGTGAAGAATCCTGAATGGCTAGTTGTTGTTGGCGTGTGCACTCACTTAGGGTGCATCCCCTTGCCAAATGCTGGTGATTTTGGCGGCTGGTTTTGTCCATGCCATGGTTCCCACTATGACATTTCTGGCAGGATTCGCAAGGGCCCCGCGCCATACAATCTTGAGGTACCCACTTACAGCTTCTTGAGTGAAAATAAGTTGCTTGTTGGCTGA 2937 44.6 MRRLYKLLISYSIFSGNHFSSQLRISHPLPHNLFRRSSSSSSAFCRSFVPMAATEELLRNTLAEKQSAVHDQGNAVRALKASGGTKPEIDAAIDALNALKLEKASVERQLQAIIAGAGGDGSVSKEAFRQTVANTLERRLFYIPAFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLIKDFCNEKLQKDLTITSDKTAELKHTLAVLDDLSAEDLGAKIKEYGITAPDTKNPLSAPYPFNLMFQTSIGPSGLNPGYMRPETAQGIFVNFKDLYYYNGNKLPFGAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKFSDVANLEFLMFPREEQMSGNSAKKIPLGEAVGRGIVNNETLGYFIGRVYLFLTHLGIDIDRLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSEKSGVLLVAQEKFSEPREVEKLIIALVKKELGLAFKGNQKNVVEALEAMDEEEAFKMKATLESDGEVEFYVCTLGKNVCIKKNMVAISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSYYMRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKVISKSLTVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTTSVTIRERDSKDQIRVNVVEAEMDKLIVREAGWFQQVWSFEAAMAMRFYALAALSKEFSGNGVASKDRTKHTYFSGFSSESLTSGHDLGLISELPATVAAVKNPTSKIVYDEYNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDVGTLRDPQEDSERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLSENKLLVG 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1972470 1980416 + BLOR09940 Blo02g00210 56440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00210 978 CDD Rieske_cytochrome_bc1 855 978 - -
Blo02g00210 978 SUPERFAMILY ISP transmembrane anchor 789 851 - -
Blo02g00210 978 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 304 601 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo02g00210 978 SMART WHEP_TRS_a_2_a_3_a 65 122 IPR000738 GO:0004812|GO:0005524|GO:0006418
Blo02g00210 978 Gene3D - 847 978 IPR036922 GO:0051537
Blo02g00210 978 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 835 978 IPR006317 GO:0008121
Blo02g00210 978 SUPERFAMILY Class II aaRS ABD-related 617 707 - -
Blo02g00210 978 Gene3D Bira Bifunctional Protein; Domain 2 133 495 IPR045864 -
Blo02g00210 978 ProSiteProfiles WHEP-TRS domain profile. 61 117 IPR000738 GO:0004812|GO:0005524|GO:0006418
Blo02g00210 978 SUPERFAMILY Class II aaRS and biotin synthetases 130 632 IPR045864 -
Blo02g00210 978 Gene3D - 627 734 IPR036621 -
Blo02g00210 978 Gene3D - 506 574 - -
Blo02g00210 978 PRINTS Glycyl-tRNA synthetase signature 336 353 - -
Blo02g00210 978 PRINTS Glycyl-tRNA synthetase signature 148 162 - -
Blo02g00210 978 PRINTS Glycyl-tRNA synthetase signature 668 687 - -
Blo02g00210 978 PRINTS Glycyl-tRNA synthetase signature 285 297 - -
Blo02g00210 978 PRINTS Glycyl-tRNA synthetase signature 353 363 - -
Blo02g00210 978 PRINTS Glycyl-tRNA synthetase signature 304 321 - -
Blo02g00210 978 PRINTS Glycyl-tRNA synthetase signature 583 595 - -
Blo02g00210 978 TIGRFAM glyS_dimeric: glycine--tRNA ligase 130 709 IPR002315 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Blo02g00210 978 Coils Coil 89 109 - -
Blo02g00210 978 SUPERFAMILY ISP domain 840 977 IPR036922 GO:0051537
Blo02g00210 978 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 908 976 IPR017941 GO:0051537
Blo02g00210 978 Gene3D - 205 289 - -
Blo02g00210 978 Pfam Anticodon binding domain 629 710 IPR004154 -
Blo02g00210 978 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 267 608 IPR006195 -
Blo02g00210 978 Pfam WHEP-TRS domain 67 103 IPR000738 GO:0004812|GO:0005524|GO:0006418
Blo02g00210 978 Pfam Rieske [2Fe-2S] domain 861 964 IPR017941 GO:0051537
Blo02g00210 978 CDD GlyRS_anticodon 599 709 - -
Blo02g00210 978 CDD GlyRS-like_core 132 478 IPR033731 -
Blo02g00210 978 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 43 709 IPR027031 -
Blo02g00210 978 SUPERFAMILY S15/NS1 RNA-binding domain 64 107 IPR009068 -
Blo02g00210 978 Pfam Ubiquinol cytochrome reductase transmembrane region 811 849 IPR004192 GO:0008121
Blo02g00210 978 Gene3D - 58 106 - -
Blo02g00210 978 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 43 709 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00210 K01880 GARS, glyS1; glycyl-tRNA synthetase [EC:6.1.1.14] - csv:101213236 1192.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00210 Blo-Chr2:1972470 Blo15g00530 Blo-Chr15:10108380 1.01E-07 dispersed
Blo07g00004 Blo-Chr7:68134 Blo02g00210 Blo-Chr2:1972470 0 transposed
Blo17g00554 Blo-Chr17:9949207 Blo02g00210 Blo-Chr2:1972470 1.05E-136 transposed
Blo02g00210 Blo-Chr2:1972470 Blo07g00003 Blo-Chr7:58342 9.48E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1355 . . . . Bpe13g00831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00210 . . . Bpe14g00818 . . Bma06g01326 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003505 1 2 2 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 1 1 2 0 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00210 Blo_Chr02 FPKM 18.596567 20.775036 18.397835 17.442532 30.114336 27.503561 33.825691 16.850079 15.94236 17.608648