Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00211 ATGGAAGATTGCAACGGGAACGGCCTGAATGTGAAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTGAGGAATTCGAAGAGGCAGCGGAGGATTTCGAGGACTGTGAGGAAGAAAATGGATTCCTGGAAGAGGATAATTTGGAGAGCAATGAGTTAGAGAAAGGCAGAATAGCTGCAATGAGATCCTTTGTTGAAAGAAAGGATCCGTCTGCTAAAGAAGTAGATGACTTTATGATGCGGAGATTTCTTCGGGCTCGCGACCTCGACATCGATAAGGCTTCTACGATGATTCTGAAGTACCTGAGCTGGAAGCGCAAATTTCTTCCCAAGGGTTTTATATCTGAGTCAGAGGTTTCAGAGGAAATTTCCCTCAACAAGATGTTCATGCAAGGCCTGGATAAGAAGGAACATCCCATTGCAGTGATCATTGGCGCTAGGCACAAACAAGGGAGTTTAGAAGAGTTCAAGAGATTTTCTATCTATAGTCTCGAGAAAATATGTGCCAGAATGCCCAGAGGGCAGGAAAAGTTTGTGTGCATAGCTGATCTTCAAGGATGGGGATATTCCAACTGTGACATTCGCGGATACAAAGCATCTCTGTCAATCTTGCAGGATTGCTACCCAGAGAGGCTAGCCAAGTTATATATCATCCACGTGCCTTACATATTCATGGCAGCGTGGAAGGCGATTTACCGATTTATTGACAAGAAAACTAAAAAGAAGATCATTTTTGTCGAGGACAAAAAGCTCAGATCCACCCTGCTCAATGACATTGATGAGAGTCAGCTGCCTCGTATTTATGGAGGCAAAATGGAGTTGGTTCCCATTCAAAGCTGCTGA 843 44.6 MEDCNGNGLNVKKEEEEEEEEEFEEFEEAAEDFEDCEEENGFLEEDNLESNELEKGRIAAMRSFVERKDPSAKEVDDFMMRRFLRARDLDIDKASTMILKYLSWKRKFLPKGFISESEVSEEISLNKMFMQGLDKKEHPIAVIIGARHKQGSLEEFKRFSIYSLEKICARMPRGQEKFVCIADLQGWGYSNCDIRGYKASLSILQDCYPERLAKLYIIHVPYIFMAAWKAIYRFIDKKTKKKIIFVEDKKLRSTLLNDIDESQLPRIYGGKMELVPIQSC 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1981216 1983259 - BLOR09941 Blo02g00211 56441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00211 280 PANTHER OS03G0850700 PROTEIN 35 280 - -
Blo02g00211 280 MobiDBLite consensus disorder prediction 14 31 - -
Blo02g00211 280 PRINTS Cellular retinaldehyde-binding protein signature 262 271 - -
Blo02g00211 280 PRINTS Cellular retinaldehyde-binding protein signature 195 216 - -
Blo02g00211 280 PRINTS Cellular retinaldehyde-binding protein signature 79 101 - -
Blo02g00211 280 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 35 280 - -
Blo02g00211 280 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 116 276 IPR001251 -
Blo02g00211 280 SUPERFAMILY CRAL/TRIO N-terminal domain 50 111 IPR036273 -
Blo02g00211 280 Gene3D - 14 278 IPR036865 -
Blo02g00211 280 SMART CRAL_TRIO_N_2 76 101 IPR011074 -
Blo02g00211 280 MobiDBLite consensus disorder prediction 1 31 - -
Blo02g00211 280 SUPERFAMILY CRAL/TRIO domain 117 273 IPR036865 -
Blo02g00211 280 Coils Coil 9 46 - -
Blo02g00211 280 CDD SEC14 129 271 IPR001251 -
Blo02g00211 280 Pfam CRAL/TRIO domain 127 270 IPR001251 -
Blo02g00211 280 SMART sec14_4 122 273 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00211 - - - cmo:103494639 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00211 Blo-Chr2:1981216 Blo06g01032 Blo-Chr6:33647814 3.34E-46 dispersed
Blo02g00211 Blo-Chr2:1981216 Blo05g00795 Blo-Chr5:29218156 1.07E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1356 . . . . Bpe13g00832 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00211 . . . Bpe14g00819 . . Bma06g01325 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007871 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00211 Blo_Chr02 FPKM 2.508617 2.750764 4.378693 4.6208 6.371242 6.585842 5.357793 9.813514 8.688403 9.768728