Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00212 ATGAAGGTGGGAATCTGGGTTGCAAGTATTTGTTATGTCTATCTTTTCGCTTGGAGAATCGCCGCTGATCAGAATGTTGTCCTTACCGAGCGAATTTCAGGAAGCGCTGGGGATGTGCTGGATGATGATCCAGTTGGAAGGTTGAAAGTCTATGTATACGACCTTCCAAGCAAATATAACAAAAAGACACTTCAGAAAGACCTTAGATGTCTCACTTACATGTTTGCTGCTGAGATCTACATGCATAGATTCCTCTTGTCAAGTCCAGTCCGTACACTCAATCCCGATGAAGCAGACTGGTTTTATACCCCAATATATGCCACTTGTGATCTCACTCCTAATGGCTTGCCATTGCCCTTCAAATCTCCTCGAATGATGCGGAGTGCTATACAACTCATCTCTTCGAATTGGCCGTATTGGAATAGAACAGAGGGGGCTGATCATTTTTTTGTTGTCCCCCATGACTTTGGGGCCTGCTTTCATTATCAGGAGGAAAAAGCCATTGAACGTGGAATTCTTCCACTACTCCAGCGAGCAACCTTGGTTCAGACATTTGGGCAAAGAAATCATGTGTGCTTGAAGGAGGGTTCAATCACTATTCCTCCATATTGTCCTCCCCAAAAAATGGAGGCTCACCTGATTCCCTCAGACACTCCTCGGTCAATCTTTGTCTACTTTCGCGGTCTGTTTTATGATGTTAATAATGATCCAGAAGGTGGTTATTATGCAAGGGGAGCCAGAGCAGGAGTATGGGAGAATTTCAAGAACAATCCGCTCTTCGACATCTCAACCGAGCATCCTACCACGTATTACGAAGATATGCAGAGATCAATATTCTGTCTGTGCCCCCTTGGGTGGGCCCCGTGGAGTCCGAGGTTGGTGGAAGCGGTGGTGTTTGGCTGCATTCCGGTCATTATAGCAGATGACATAGTGTTGCCATTTGCCGATGCAATTCCGTGGGAAGAAATTGGAGTTTTTGTGGAGGAAGAAGATGTCCCCAAGTTAGATACAATCCTCACATCTATACCGCCTAATGTCATATTGAGGAAGCAGAGGCTGCTAGCGAATCCGACGATGAAGATGGCAATGATGTTTCCTCAGCCAGCCCAAGCGGGAGATGCGTTTCATCAGATTCTCAATGGTCTGGCTCGTAAATTGCCGCATGAGAAGAGTATTTATGTGAAGCCAAGTGAGAAGGTTTTGAATTGGAGTGCAGGGCCAGTTGGGGACATGAAACCTTGTATAAAATGTTCGCAGAATGGTGGAAATGGAAGTGCGACAAAGAGAACTGTTCTTCATGATTTGTACGAGAAGGAAGGACAAAGTCCTTGGTATGATAACCTTTGCCGACCTGTTACGGATCTTCTTCCTCTAATTGCTAAGGGTGTTAGAGGTGTAACCAGCAATCCAGCGATTTTCCAGAAAGCCATATCTTCTTCAAATGCTTACAATGATCAATTCAGAGAACTTATACAATCTGGGAAAGATATTGAAAGTGCATACTGGGATCTTGTGGTGAAGGACATTCAAGATGCATGCAAACTTTTTGAGCCGATTTATGATCAAACAGATGCTGCTGATGGCTATGTTTCTGTTGAAGTTTCTCCCAAGTTGGCAGATGATACTAAAGGAACTGTTGAAGCTGCAAAGTATCTCCATAAAGTGGTTAATCGCCCAAATGTGTACATAAAGATCCCTGCTACTGCCCCTTGTGTACCTTCCATTATGGAAACCATTTCACTTGGCATAAGCGTCAATGTGACCCTCATATTTTCCCTTCCCAGATACGAGGCTGTAATTGATGCTTACTTGGATGGTCTTGAAGCTTCCGGGCTTAGTGACCTTTCTAGAGTTACAAGTGTTGCTTCGTTCTTTGTCAGCCGTGTAGACACCCTCATTGACAAGCTGCTTGAGAAGATTGGGACGCCAGAGGCTCTTGATCTTCGAGGGAAGGCGGCAGTAGCTCAAGCTGTACTTGCATACCAGCTATATCAGAAGAAGTTTTCTGGTCCAAGATGGGAGGCTCTGGTGAAGAAGGGCGCCAAGAAGCAAAGGGTGCTATGGGCCTCGACCAGTGTCAAGAATCCTGCATACCCAGACACTCTATACGTAGCTCCTCTCATTGGACCCGACACGGTTTCTACCATGCCTGATCAAGCACTTGAAGCATTTGTTGACCATGGTGCTGTTTCAAGGACGATCGATTCCAACGTGTCGGAAGCCGAAGGTGTTTACAATGCAATTGAGAAGCTGGGGATCAGTTGGAATGAAGTTGGGTCTCAGCTTGAATTGGAAGGAGTGGATTCTTTTAAGAAAAGTTTTGACAGCCTCATTGACACCCTGCAAGAGAAGGCCAACGCTCTTAAATTGGTTAGTCTAGATGGCGAGGTCCTCAATCTCTTCAGGAACAGCCCCAGAAGTCCTGCTCTTCAAGTTTTCGCAGTAAGATGGATTTCAGTACAGTATAATGCTGAATTTCAACGGCTGTTTTGTTCGAGACTTGGTTTTCTTTATGGGTTTACTCTACGAAGTCAGAATCGTAGTTTGTTTTCAGTTTCTCTTACATATGGAAGTGTTCTCGCAGGCCATGAGCTGGTATTTGAGCGAAGAGGAGTGCTGATCTCATTCACTGGGTTACTAGCTGGAGTCTTGTTGCATTCTTCAAATGAGGGAGCATCTATGGCTTCTGAATTTACAGAGATGCCAGCACTCAGAGGGAAGGATTATGGCAAGACAAAAATGAAGTATCCAGACTATATAGAGACAGAATCAGGTCTTCAATACAAGGACTTGCGAAAAGGAGATGGGCTCGTGCCGAAAGTAGGAGATACTGTTGTGGTTGATTGGGATGGTTACACTATAGGATATTATGGCCGCATATTTGAAGCCCGGAATAAGACAAAGGGTGGTTCATTTGTGGGAGATGACAAGGAGTTTTTCAAATTTAGACTAGGTTCTCAGCAGGTAATTCCGGCCTTTGAAGAAGCAGTGTCGGGCATGGCCTTGGGTGGCGTTAGAAGGATCATAGTGCCGCCAGAACTGGGTTATCCGGAGAACGACTATAACAAAAGTGCTCCGAAACCAACAACATTTTCGGGTCAACGAGCTCTGGATTTTGTGCTGCGGAACCAAGGGTTGATAGACAAAACACTCTTGTTCGATATCGAACTGCTTAAAATCATACAAAACTGA 3192 44.99 MKVGIWVASICYVYLFAWRIAADQNVVLTERISGSAGDVLDDDPVGRLKVYVYDLPSKYNKKTLQKDLRCLTYMFAAEIYMHRFLLSSPVRTLNPDEADWFYTPIYATCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYCPPQKMEAHLIPSDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAGVWENFKNNPLFDISTEHPTTYYEDMQRSIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVEEEDVPKLDTILTSIPPNVILRKQRLLANPTMKMAMMFPQPAQAGDAFHQILNGLARKLPHEKSIYVKPSEKVLNWSAGPVGDMKPCIKCSQNGGNGSATKRTVLHDLYEKEGQSPWYDNLCRPVTDLLPLIAKGVRGVTSNPAIFQKAISSSNAYNDQFRELIQSGKDIESAYWDLVVKDIQDACKLFEPIYDQTDAADGYVSVEVSPKLADDTKGTVEAAKYLHKVVNRPNVYIKIPATAPCVPSIMETISLGISVNVTLIFSLPRYEAVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKLLEKIGTPEALDLRGKAAVAQAVLAYQLYQKKFSGPRWEALVKKGAKKQRVLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALEAFVDHGAVSRTIDSNVSEAEGVYNAIEKLGISWNEVGSQLELEGVDSFKKSFDSLIDTLQEKANALKLVSLDGEVLNLFRNSPRSPALQVFAVRWISVQYNAEFQRLFCSRLGFLYGFTLRSQNRSLFSVSLTYGSVLAGHELVFERRGVLISFTGLLAGVLLHSSNEGASMASEFTEMPALRGKDYGKTKMKYPDYIETESGLQYKDLRKGDGLVPKVGDTVVVDWDGYTIGYYGRIFEARNKTKGGSFVGDDKEFFKFRLGSQQVIPAFEEAVSGMALGGVRRIIVPPELGYPENDYNKSAPKPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIIQN 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1989010 1998128 + BLOR09942 Blo02g00212 56442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00212 1063 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 939 1058 IPR001179 GO:0003755
Blo02g00212 1063 CDD Transaldolase_like 442 776 IPR004732 GO:0004801|GO:0005737|GO:0006098
Blo02g00212 1063 SUPERFAMILY FKBP-like 896 1061 - -
Blo02g00212 1063 PANTHER BNAA08G02750D PROTEIN 414 792 - -
Blo02g00212 1063 ProSitePatterns Transaldolase signature 1. 465 473 IPR018225 GO:0005975
Blo02g00212 1063 Gene3D Aldolase class I 430 785 IPR013785 -
Blo02g00212 1063 Hamap Transaldolase [tal]. 432 791 IPR004732 GO:0004801|GO:0005737|GO:0006098
Blo02g00212 1063 Pfam Transaldolase/Fructose-6-phosphate aldolase 458 780 IPR001585 GO:0005975
Blo02g00212 1063 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 942 1061 IPR001179 GO:0003755
Blo02g00212 1063 TIGRFAM tal_mycobact: transaldolase 442 778 IPR004732 GO:0004801|GO:0005737|GO:0006098
Blo02g00212 1063 Pfam Exostosin family 47 342 IPR040911 -
Blo02g00212 1063 PANTHER TRANSALDOLASE 414 792 IPR001585 GO:0005975
Blo02g00212 1063 SUPERFAMILY Aldolase 438 784 - -
Blo02g00212 1063 Gene3D - 895 1063 IPR046357 GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00212 K20870 IRX10; putative beta-1,4-xylosyltransferase IRX10 [EC:2.4.2.-] - csv:101204172 770.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00212 Blo-Chr2:1989010 Blo08g00018 Blo-Chr8:174177 1.83E-93 dispersed
Blo03g00496 Blo-Chr3:17946562 Blo02g00212 Blo-Chr2:1989010 1.05E-06 dispersed
Blo11g00134 Blo-Chr11:1032850 Blo02g00212 Blo-Chr2:1989010 1.25E-25 dispersed
Blo12g00587 Blo-Chr12:24171267 Blo02g00212 Blo-Chr2:1989010 3.35E-24 dispersed
Blo02g00212 Blo-Chr2:1989010 Blo14g00200 Blo-Chr14:1686036 7.32E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0644 Cone15ag0654 . . . . . . Blo02g00212 . . . Bpe14g00821 . . . . . . . . . . . Cpe03g01174 . . . . . . . . . . . . . . . . Chy07g01548 Cme07g01994
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001872 1 2 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 3 1 2 3 5 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00212 Blo_Chr02 FPKM 4.346193 4.827587 576.001587 601.820618 8.306962 7.522649 7.444366 3554.841064 4358.423828 3720.935303