Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00230 ATGGCAACGAGTTTTACGGATTTAGAATACAATAATCTAGATCATCTCCATCACAATCATCAACAACCACAGCACCATCATCAACAGAATCAAATTTCTTCTGGGTTTTATGGAGGATCGAATTCCATGGATAAAGTAAGCTTCGCAGAGGTGATGCAGTTCGCAGATTTTGGACCAAAATTAGGTTTAACACAAAACAAGATAGTTGAAGAGTACCAATCAGGAATGGATCCGATATACTTCCTCAAATTCCCAGTTTTAAACGATAAAGTAGACGATCAATCTCTTATGGCTTCAAGAGAGGAAGAGACCGAGGAGAGGTTTCGAGAAATGGAAGGGAAGAACAAGAGGAAAAGGCCGAGAACTATAAAAACCAGTGAGGAAGTTGAAAGCCAGAGAATGACGCATATTGCAGTGGAAAGAAATAGAAGAAAGCAAATGAATGAACATCTTCGAGTTTTGAGGTCTCTCATGCCAGGCTCCTACGTTCAAAGGGGAGACCAAGCTTCCATAATCGGAGGAGCAATTGAATTCGTCAGAGAATTGGAGCAACTTCTTCAATGCTTAGAGTCACAGAAAAGGAGGAGAATCATGGGAGAAGCTCCAACTCCAAGACAAACAGGCGAGCCATCCACAGTTGGAATGCAGCAAAATCAACCTTCATTTTTTCCTCCACTTCCTCTTCCAAATGAACAGCTGAAGATCATGGACTTCGAAACCGGCCTCCGGGAAGAAATCGCCGAGAACAAGTCTGGATTAGCTGACGTGGAAGTGAAGCTTATAGGGTTTCATGCGATGATCAAAATCCTATCAAGAAGACGACCAGGCCAGCTCATTAAGACCATTGCTGCGCTCGAAGATTTGCAGCTAAACATTCTTCACACCAACATCACGACCATCGAACAAACAGTTCTTTATTCATTCAACGTCAAGCTTGAACAGGTTGCAAGTGAATCCAGATTCTCAGCTGAAGATATAGCTACCTCAGTTCAACAGATTTTCAGTTTTATTAATGCAAACGATGCTTGA 1029 41.98 MATSFTDLEYNNLDHLHHNHQQPQHHHQQNQISSGFYGGSNSMDKVSFAEVMQFADFGPKLGLTQNKIVEEYQSGMDPIYFLKFPVLNDKVDDQSLMASREEETEERFREMEGKNKRKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRIMGEAPTPRQTGEPSTVGMQQNQPSFFPPLPLPNEQLKIMDFETGLREEIAENKSGLADVEVKLIGFHAMIKILSRRRPGQLIKTIAALEDLQLNILHTNITTIEQTVLYSFNVKLEQVASESRFSAEDIATSVQQIFSFINANDA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2182195 2183590 + BLOR09960 Blo02g00230 56460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00230 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 206 IPR036638 GO:0046983
Blo02g00230 342 Gene3D - 129 200 IPR036638 GO:0046983
Blo02g00230 342 CDD bHLH_AtFAMA_like 134 207 - -
Blo02g00230 342 CDD ACT_UUR-ACR-like 266 314 - -
Blo02g00230 342 Pfam Helix-loop-helix DNA-binding domain 132 183 IPR011598 GO:0046983
Blo02g00230 342 ProSiteProfiles ACT domain profile. 266 342 IPR002912 -
Blo02g00230 342 SMART finulus 137 188 IPR011598 GO:0046983
Blo02g00230 342 PANTHER TRANSCRIPTION FACTOR FAMA 12 105 IPR044283 GO:0003700|GO:0010052
Blo02g00230 342 MobiDBLite consensus disorder prediction 19 38 - -
Blo02g00230 342 PANTHER TRANSCRIPTION FACTOR FAMA 105 341 IPR044283 GO:0003700|GO:0010052
Blo02g00230 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 182 IPR011598 GO:0046983
Blo02g00230 342 PANTHER TRANSCRIPTION FACTOR FAMA 12 105 - -
Blo02g00230 342 PANTHER TRANSCRIPTION FACTOR FAMA 105 341 - -
Blo02g00230 342 MobiDBLite consensus disorder prediction 98 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00182 Blo-Chr2:1636906 Blo02g00230 Blo-Chr2:2182195 8.82E-55 dispersed
Blo02g00230 Blo-Chr2:2182195 Blo06g01076 Blo-Chr6:34095945 1.59E-42 dispersed
Blo02g00230 Blo-Chr2:2182195 Blo07g00030 Blo-Chr7:515651 2.48E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11998 PF00010 HLH 6.70E-10 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00230 - - pvy:116125979 439.884