Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00231 ATGGTGTCAGGGTCGGGGATATGCGCAAAGCGTGTGGTGGTTGATGCGAGGCACCACATGCTTGGAAGGCTGGCTTCTATTTTGGCGAAGGAGCTGCTGAATGGCCAGAAGGTGGTTGTGGTTAGATGCGAGGAGATTTGCATTTCTGGTGGATTGGTGCGGCAGAAGATGAAGTACTTGAGGTTCTTGAGAAAGCGCATGAATACCAAGCCTTCTCATGGTCCTATTCACTTCCGAGCTCCTGCTAAAATCCTTTGGCGCACCATTCGCGGGATGATTCCTCACAAGACCAAGCGAGGAGCAGCCGCCCTTGGTCGGTTGAAAGCATACGAGGGTATTCCTCCTCCTTATGATAAGAAGAAGAGGATGGTCATTCCCGATGCTCTGAAAGTTTTGAGGCTCCAAGCTGGACACAAGTACTGCTTATTAGGCAAACTTTCTTCTGAGGTTGGATGGAACCACTATGACACTATTAAGGAGCTTGAAAGGAAGAGAAAGGAAAAGTCACAGGCAGTGTATGAGAGGAAGAAGCAGTTGACCAAGCTTCGTCTCCAAGCTGAGAAGGCTGCTGAGGAGAAGCTTGGTGCTCATCTTGAAGAAAGTTCGAGAATGTATTCTGGTCTCCACTCTCTACCGATTGATGCCAAGTTTCAGGGATCTTTGGACGGAACCAACTTACCCGGCGATGCTTGTTTAGTTCTTACTTCCGATCCGAAGCCTCGCCTCCGGTGGACGGGGGAGCTACACGAGAGATTCGTTGACGCCGTAACTCAACTTGGTGGTCCTGAAAAAGCAACACCTAAGACTATAATGAGAACAATGGGAGTAAAAGGTTTAACCCTTTATCACTTGAAATCACACCTCCAGAAATACCGGTTGGGGAAGCAATCCAGCAAGGAATTGGCCGAGAACATGAAGGATGTGTCTAGCATATCACAAAATCCGGACACTACTTCCTCTCCTTTAGCATCGCCAAGAATGATTCCTCAAGATGTGAACGATGGCTATCAGGTTACCGAGGCTTTGCGGGTTCAAATGGAAGTCCAGAGAAGACTACATGAGCAGCTGGAGGTCCAGCGTCGGCTTCAACTTCGCATCGAAGCACAAGGAAAATACCTGCAATCGATTCTCGAGAAAGCATGTCAAGCCTTAAACGATCAAACTGCTGCACCGGCCAGGCTCGAGGCTGCGAGGGAAGAGCTCTCCGAGCTACAAATTAAGGTTTCAACCGATTACCGAGGAATGGGCTCTCGGGACACACTCAAAATGCCACCTTCCTTATCGGAACTCTCTGCAGCTCTTGAAAGTCGAAGTACTGTTCCCAATATTCCTCGTGTGGGAGATTGCTCTGTTGAAAGTTGCTTGACATCGGCAGGAAGCCCCGTTTCTCCAATGCGAATAGGCTCGGTCGCTGCTGTGATGGAGAAGAGACCGAGGTCCTTGTTTGGAAACGGAGACTCGCTGTCTGTTGACCCAAACATGCGACAAGAAATCGAATGGATGATGACTGACATCGGATGA 1521 49.18 MVSGSGICAKRVVVDARHHMLGRLASILAKELLNGQKVVVVRCEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALGRLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELERKRKEKSQAVYERKKQLTKLRLQAEKAAEEKLGAHLEESSRMYSGLHSLPIDAKFQGSLDGTNLPGDACLVLTSDPKPRLRWTGELHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSSKELAENMKDVSSISQNPDTTSSPLASPRMIPQDVNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACQALNDQTAAPARLEAAREELSELQIKVSTDYRGMGSRDTLKMPPSLSELSAALESRSTVPNIPRVGDCSVESCLTSAGSPVSPMRIGSVAAVMEKRPRSLFGNGDSLSVDPNMRQEIEWMMTDIG 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2205649 2211515 + BLOR09961 Blo02g00231 56461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00231 506 Gene3D - 156 203 - -
Blo02g00231 506 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 204 503 IPR044848 GO:0003700
Blo02g00231 506 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 TIGRFAM L13_A_E: ribosomal protein uL13 12 153 IPR005755 GO:0003735|GO:0006412|GO:0015934
Blo02g00231 506 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 Gene3D - 238 296 - -
Blo02g00231 506 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 239 294 IPR006447 GO:0003677
Blo02g00231 506 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 MobiDBLite consensus disorder prediction 302 328 - -
Blo02g00231 506 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 296 IPR017930 -
Blo02g00231 506 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 Pfam Myb-like DNA-binding domain 242 292 IPR001005 -
Blo02g00231 506 Pfam MYB-CC type transfactor, LHEQLE motif 337 382 IPR025756 -
Blo02g00231 506 PANTHER PROTEIN PHR1-LIKE 2 204 503 - -
Blo02g00231 506 SUPERFAMILY Homeodomain-like 239 295 IPR009057 -
Blo02g00231 506 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 MobiDBLite consensus disorder prediction 303 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00231 Blo-Chr2:2205649 Blo16g00686 Blo-Chr16:26498630 7.36E-129 dispersed
Blo11g00775 Blo-Chr11:11238121 Blo02g00231 Blo-Chr2:2205649 6.59E-35 dispersed
Blo13g01012 Blo-Chr13:32463819 Blo02g00231 Blo-Chr2:2205649 8.52E-44 dispersed
Blo15g00640 Blo-Chr15:17129641 Blo02g00231 Blo-Chr2:2205649 2.23E-39 dispersed
Blo03g00894 Blo-Chr3:34940684 Blo02g00231 Blo-Chr2:2205649 9.70E-31 transposed
Blo16g00685 Blo-Chr16:26475340 Blo02g00231 Blo-Chr2:2205649 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11999 PF00572 Ribosomal_L13 3.70E-25 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00231 - - vvi:100250267 436.417