Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00231 ATGGTGTCAGGGTCGGGGATATGCGCAAAGCGTGTGGTGGTTGATGCGAGGCACCACATGCTTGGAAGGCTGGCTTCTATTTTGGCGAAGGAGCTGCTGAATGGCCAGAAGGTGGTTGTGGTTAGATGCGAGGAGATTTGCATTTCTGGTGGATTGGTGCGGCAGAAGATGAAGTACTTGAGGTTCTTGAGAAAGCGCATGAATACCAAGCCTTCTCATGGTCCTATTCACTTCCGAGCTCCTGCTAAAATCCTTTGGCGCACCATTCGCGGGATGATTCCTCACAAGACCAAGCGAGGAGCAGCCGCCCTTGGTCGGTTGAAAGCATACGAGGGTATTCCTCCTCCTTATGATAAGAAGAAGAGGATGGTCATTCCCGATGCTCTGAAAGTTTTGAGGCTCCAAGCTGGACACAAGTACTGCTTATTAGGCAAACTTTCTTCTGAGGTTGGATGGAACCACTATGACACTATTAAGGAGCTTGAAAGGAAGAGAAAGGAAAAGTCACAGGCAGTGTATGAGAGGAAGAAGCAGTTGACCAAGCTTCGTCTCCAAGCTGAGAAGGCTGCTGAGGAGAAGCTTGGTGCTCATCTTGAAGAAAGTTCGAGAATGTATTCTGGTCTCCACTCTCTACCGATTGATGCCAAGTTTCAGGGATCTTTGGACGGAACCAACTTACCCGGCGATGCTTGTTTAGTTCTTACTTCCGATCCGAAGCCTCGCCTCCGGTGGACGGGGGAGCTACACGAGAGATTCGTTGACGCCGTAACTCAACTTGGTGGTCCTGAAAAAGCAACACCTAAGACTATAATGAGAACAATGGGAGTAAAAGGTTTAACCCTTTATCACTTGAAATCACACCTCCAGAAATACCGGTTGGGGAAGCAATCCAGCAAGGAATTGGCCGAGAACATGAAGGATGTGTCTAGCATATCACAAAATCCGGACACTACTTCCTCTCCTTTAGCATCGCCAAGAATGATTCCTCAAGATGTGAACGATGGCTATCAGGTTACCGAGGCTTTGCGGGTTCAAATGGAAGTCCAGAGAAGACTACATGAGCAGCTGGAGGTCCAGCGTCGGCTTCAACTTCGCATCGAAGCACAAGGAAAATACCTGCAATCGATTCTCGAGAAAGCATGTCAAGCCTTAAACGATCAAACTGCTGCACCGGCCAGGCTCGAGGCTGCGAGGGAAGAGCTCTCCGAGCTACAAATTAAGGTTTCAACCGATTACCGAGGAATGGGCTCTCGGGACACACTCAAAATGCCACCTTCCTTATCGGAACTCTCTGCAGCTCTTGAAAGTCGAAGTACTGTTCCCAATATTCCTCGTGTGGGAGATTGCTCTGTTGAAAGTTGCTTGACATCGGCAGGAAGCCCCGTTTCTCCAATGCGAATAGGCTCGGTCGCTGCTGTGATGGAGAAGAGACCGAGGTCCTTGTTTGGAAACGGAGACTCGCTGTCTGTTGACCCAAACATGCGACAAGAAATCGAATGGATGATGACTGACATCGGATGA 1521 49.18 MVSGSGICAKRVVVDARHHMLGRLASILAKELLNGQKVVVVRCEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALGRLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELERKRKEKSQAVYERKKQLTKLRLQAEKAAEEKLGAHLEESSRMYSGLHSLPIDAKFQGSLDGTNLPGDACLVLTSDPKPRLRWTGELHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSSKELAENMKDVSSISQNPDTTSSPLASPRMIPQDVNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACQALNDQTAAPARLEAAREELSELQIKVSTDYRGMGSRDTLKMPPSLSELSAALESRSTVPNIPRVGDCSVESCLTSAGSPVSPMRIGSVAAVMEKRPRSLFGNGDSLSVDPNMRQEIEWMMTDIG 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2205649 2211515 + BLOR09961 Blo02g00231 56461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00231 506 Gene3D - 156 203 - -
Blo02g00231 506 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 204 503 IPR044848 GO:0003700
Blo02g00231 506 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 TIGRFAM L13_A_E: ribosomal protein uL13 12 153 IPR005755 GO:0003735|GO:0006412|GO:0015934
Blo02g00231 506 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 Gene3D - 238 296 - -
Blo02g00231 506 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 239 294 IPR006447 GO:0003677
Blo02g00231 506 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 MobiDBLite consensus disorder prediction 302 328 - -
Blo02g00231 506 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 296 IPR017930 -
Blo02g00231 506 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 Pfam Myb-like DNA-binding domain 242 292 IPR001005 -
Blo02g00231 506 Pfam MYB-CC type transfactor, LHEQLE motif 337 382 IPR025756 -
Blo02g00231 506 PANTHER PROTEIN PHR1-LIKE 2 204 503 - -
Blo02g00231 506 SUPERFAMILY Homeodomain-like 239 295 IPR009057 -
Blo02g00231 506 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Blo02g00231 506 MobiDBLite consensus disorder prediction 303 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00231 - - - vvi:100250267 436.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00231 Blo-Chr2:2205649 Blo16g00686 Blo-Chr16:26498630 7.36E-129 dispersed
Blo11g00775 Blo-Chr11:11238121 Blo02g00231 Blo-Chr2:2205649 6.59E-35 dispersed
Blo13g01012 Blo-Chr13:32463819 Blo02g00231 Blo-Chr2:2205649 8.52E-44 dispersed
Blo15g00640 Blo-Chr15:17129641 Blo02g00231 Blo-Chr2:2205649 2.23E-39 dispersed
Blo03g00894 Blo-Chr3:34940684 Blo02g00231 Blo-Chr2:2205649 9.70E-31 transposed
Blo16g00685 Blo-Chr16:26475340 Blo02g00231 Blo-Chr2:2205649 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11999 PF00572 Ribosomal_L13 3.70E-25 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00231 Blo_Chr02 FPKM 0.0 1.134042 11.058148 13.535443 44.56765 38.346512 46.543606 1.20962 1.410249 0.551925