Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00232 ATGTCGGGCGTTTCTGTGAAGTGCGGTGACTGTGGAGCTCTATTGAGGTCTCTACAAGAAGCTCAAGAGCATGCAGAGCTCACCTCTCACTCCAATTTCTCCGAGTCTACCGAGGCTGTCCTCAATCTCGTTTGCACCACCTGCGGCAAACCATGCCGATCCAAAACTGAAACTGACTTGCACACAAAAAGAACTAGCCATGCTGATTTTACTGATAAGACTTCAGAGGCGACAAAACCAATAAATTTAGAGGCTTCCAAGATAGCTGAAGAAGCAGAAGAGGCTGCAAAGGCTAGTACTAGTCAGCCTGAAGAAATGGTTGTGCCAGAGGTTGACAAAAAGGTGCTTGAAGAGCTTGAAGAAATGGGTTTCTCTGCAGCCCGTGCCACTCGCGCCCTTCATTATTCTGGTAATTCTGGTGTTGAGGCGGCTATTAATTGGGTAGTTGAACATGAAGACGATCCTGACATAGATCAGATGCCGCTTGTACCTAAGGTTGGGGCTCCAAAACCTTCTCTTACGCCGGAAGAAATTCAAATTAAACAACATGAGCTAAGAGAACGTGCTCGCAAGAAAAAAGAAGAGGAAGAAAAGAAAACAGAAAGAGAAAGGGAAAAGGAGAGAATTCGAGTGGGCAAGGAGCTTTTAGAAGCAAAGAGAATTGAGGAAGAGAATGAACGGAAAAGGATTATGGCTTTGAGAAAAGCTGAAAAGGAGGAAGAGAAAAGAGCCCGGGATAAAATTCGTCAAAAATTAGACGAGGACAAGGCAGAAAGAAGAAGGAAGCTTGGATTGGCACCAGAAGATCCTTCTACAGTAAAACCTTCTGCATCTGTAGTTGAAGAGAAAAAGAGCATGTTGCCAATTAGGCCTGCCACGAAGGCTGAGCAAATTCGAGAATGTTTGCGATCTCTTAAACAGCATCACAAGGCAAGTTCATTCAGACAAGTGAAGCGAGCATTCCAGACTCTTCTTACTTATGTGGGGAACGTGGCCCGAAATCCTAGCGAGGAAAAATTCCGAAAGATAAGACTCACGAACCAATCTTTCCAGGAGAGAGTTGGCGGATTGAAAGGCGGCATTGAGTTTCTCGAGCTGTGCGGGTTTGAGAAAACGCAAGGAGATGAGTTCTTGTTTCTGGCGAGAGACAAAGTTGATATTGGGGTGCTGAACTCATCTGGTGCAGAGCTGGACTCTGCGCTGAAGAATCCTTTTTTTGGGGTTCTTTAA 1230 45.28 MSGVSVKCGDCGALLRSLQEAQEHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTETDLHTKRTSHADFTDKTSEATKPINLEASKIAEEAEEAAKASTSQPEEMVVPEVDKKVLEELEEMGFSAARATRALHYSGNSGVEAAINWVVEHEDDPDIDQMPLVPKVGAPKPSLTPEEIQIKQHELRERARKKKEEEEKKTEREREKERIRVGKELLEAKRIEEENERKRIMALRKAEKEEEKRARDKIRQKLDEDKAERRRKLGLAPEDPSTVKPSASVVEEKKSMLPIRPATKAEQIRECLRSLKQHHKASSFRQVKRAFQTLLTYVGNVARNPSEEKFRKIRLTNQSFQERVGGLKGGIEFLELCGFEKTQGDEFLFLARDKVDIGVLNSSGAELDSALKNPFFGVL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2224924 2230332 + BLOR09962 Blo02g00232 56462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00232 409 SUPERFAMILY PUG domain-like 304 405 IPR036339 -
Blo02g00232 409 Pfam PUB domain 316 386 IPR018997 -
Blo02g00232 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Blo02g00232 409 CDD PUB_UBA_plant 302 409 - -
Blo02g00232 409 Coils Coil 178 210 - -
Blo02g00232 409 MobiDBLite consensus disorder prediction 234 282 - -
Blo02g00232 409 MobiDBLite consensus disorder prediction 234 267 - -
Blo02g00232 409 MobiDBLite consensus disorder prediction 177 207 - -
Blo02g00232 409 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Blo02g00232 409 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Blo02g00232 409 PANTHER F13M7.16 PROTEIN 1 409 - -
Blo02g00232 409 PANTHER F13M7.16 PROTEIN 1 409 - -
Blo02g00232 409 Pfam UBA/TS-N domain 113 147 IPR015940 -
Blo02g00232 409 MobiDBLite consensus disorder prediction 166 207 - -
Blo02g00232 409 SMART uba_6 112 150 IPR015940 -
Blo02g00232 409 Gene3D - 297 398 - -
Blo02g00232 409 Coils Coil 213 258 - -
Blo02g00232 409 CDD UBA_PUB_plant 110 158 - -
Blo02g00232 409 Gene3D - 112 158 - -
Blo02g00232 409 SUPERFAMILY UBA-like 91 165 IPR009060 GO:0005515
Blo02g00232 409 SMART PGNneu 319 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00232 Blo-Chr2:2224924 Blo16g00788 Blo-Chr16:33108228 7.51E-15 dispersed
Blo01g00769 Blo-Chr1:10842028 Blo02g00232 Blo-Chr2:2224924 1.89E-07 transposed
Blo16g00681 Blo-Chr16:26431178 Blo02g00232 Blo-Chr2:2224924 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00232 K24348 - jre:109003439 571.622