Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00244 ATGGGTTCTGCAGGAAACTCAAATCCATGGTTTCCGTACCAGTCATACAGAGACTGTTCTCAAGGATTCTGCTCCATATACTGTCCCCAATGGTGCTATATTATCCTCCCTCCTCCTCCACCTTTCGCCGTTGAAGACAACTCAAACTCCTCCCCCTTTGATTTCTCTCCTCTCATAGTAGCACTCATCGGAATCCTAGCCTCTGCTTTCATTATCATAGGCTACTTCACCTTCATCTCCAAATACTTCCGGCGAACCACCGGCAACAACGCCAGCGGAGCTGTTGATTCAGATGACCAAATAAGCTCAGAATCATATCAAGTTTCTTCATCTTCGGGTCTGGATGAGGCTCTGATCAAGTCTATAACAGTTTGGAAGTACAAAAAAAATGATGGGTTTGTTGAAGAAACTGATCATTGCTCTGTTTGTCTCTCTGAGTTTCAAGAAAATGAAAGCCTGAGGATTTTGCCAAAATGTAGCCACCCCTTTCACCTACCATGTATTGACACGTGGCTGATGTCTAATTCTAGCTGTCCTTTGTGTCGTTCTACTATCTCACCCACTAGTATTTTGCCCATTCCTGCTCAACAAACTCACCCATCTGGTTTGAATTTGTCTCCACTTGATTCCCAGTTCAGAAGCAACGGTCAGACTGTTTTAGTGGTTCAGAATTTCCAGGAAGCCATTGTTGCTGAGGCTGGAAGCGATGGCTCTCCTAAGCATAACAACGGGAGAGTTTCTGCAGAAAGACAAAGCTCAGAGCAGAGAGAGATCATAATTGAAATGAGAGAAGATGGGTTCCAGTTCCAGCCATTCAGGACGTCTGTTTCCATGACTTCTTGTTCATATCCATCCCATGCTTCTGCTGATAACGTTTTAAGAGCTACCAACGATGGTGAAAAAGCAGAAGAGGAAGAGGAAGAGGAAGAGCAAGAGCAAGAGCAAGAAGACTTACAAATGGGGATTGGATCCTCAAGAGGAATTGAAAAAGAAGAGACCTATCTCAGATTCAAATCAAATGCTAAGATCTGA 1032 43.9 MGSAGNSNPWFPYQSYRDCSQGFCSIYCPQWCYIILPPPPPFAVEDNSNSSPFDFSPLIVALIGILASAFIIIGYFTFISKYFRRTTGNNASGAVDSDDQISSESYQVSSSSGLDEALIKSITVWKYKKNDGFVEETDHCSVCLSEFQENESLRILPKCSHPFHLPCIDTWLMSNSSCPLCRSTISPTSILPIPAQQTHPSGLNLSPLDSQFRSNGQTVLVVQNFQEAIVAEAGSDGSPKHNNGRVSAERQSSEQREIIIEMREDGFQFQPFRTSVSMTSCSYPSHASADNVLRATNDGEKAEEEEEEEEQEQEQEDLQMGIGSSRGIEKEETYLRFKSNAKI 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2335316 2336347 - BLOR09974 Blo02g00244 56474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00244 343 MobiDBLite consensus disorder prediction 284 343 - -
Blo02g00244 343 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 5 314 - -
Blo02g00244 343 Coils Coil 292 321 - -
Blo02g00244 343 CDD RING-H2_PA-TM-RING 139 182 - -
Blo02g00244 343 SUPERFAMILY RING/U-box 125 188 - -
Blo02g00244 343 MobiDBLite consensus disorder prediction 301 316 - -
Blo02g00244 343 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 314 IPR044675 -
Blo02g00244 343 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Blo02g00244 343 MobiDBLite consensus disorder prediction 232 253 - -
Blo02g00244 343 SMART ring_2 140 181 IPR001841 -
Blo02g00244 343 MobiDBLite consensus disorder prediction 329 343 - -
Blo02g00244 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 188 IPR013083 -
Blo02g00244 343 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00244 Blo-Chr2:2335316 Blo11g00017 Blo-Chr11:192426 1.51E-31 dispersed
Blo09g00324 Blo-Chr9:13593294 Blo02g00244 Blo-Chr2:2335316 2.49E-16 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00244 - - csv:101222852 293.893