Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00408 ATGAAGAAGAAGACGAAATCCGAATCCGGAAGTGGAGAGACGTTGCTATTAAAGGTGAGGCTAGATCATCAAGTTAAATTCGGGGAGCATGTAGTAATTATAGGGTCTACTAAAGAACTGGGCTCATGGAAGAAGAGCGTCCCTCTCAATTGGAGTGAGAATGGATGGGTTTGCGATTTGGATCTGAAAGGGGGTGATTCAGTTGAGTACAAGTTCGTAATTGTTAGAAAGGATAAGAGCAAGTTGTGGGAAGGAGGATCTAATCGAGTTCTCCAGCTTCCTACGAATGGGGTTTTCAGCTCGGTTTGCCGGTGGAATGCGACTAATGAGGCTTTGGAATTATTGCAATTGGAAGGAGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGGGCGGGTGTGAGCAATACTGAATCACTTGTGGAAGTGGAGATGAGCCCTTTTGTGGGTCAATGGCAAGGGAAAGCTGTCTCTTTTATGCGATCGAATGAACATGGTAACCGAGAAAATGAGAGAAAATGGGATACCTCTGGTCTTCAGGGATTGGCTCTAAAGTTAGTAGAAGGAGATCGAAATGCCAGGAATTGGTGGAGAAAGCTTGAAGTTGTACGTGAGCTTCTAGTTGAAAGTTTACCTACTGAGGCCTGCTTGGAGGCTCTAATATATTCTGCTATCTACCTTAAGTGGATAAACACAGGCCAAATTCCTTGTTATGAAGATGGAGGCCACCACCGACCTAATAGACATGCTGAGATTTCCAGGCTTATATTCCGCGAATTGGAAAGAATCTCATACAAGAAAGCTATTTCACCCCAGGAGGTGCTTGTTCTCCGAAAAAGTCATCCATGTTTACCATCTTTTAAAGCAGAGTTTACTGCTTCGGTACCTTTAACTCGAATACGAGATATTGCTCATCGGAATGACATCCCACATGACCTCAAGCAAGAAATCAAACACACAATACAAAACAAACTTCATCGTAATGCTGGTCCAGAAGATTTAATTGCTACAGAAGCAATGCTGGCAAGAATCACTAAAATCCCTGGTCAATATAGCGAAGCATTTGTGGAGCAGTTCAAGATATTCCATCGTGAACTGAAAGACTTTTTTAATGCTGGAAGTCTTGCTGAACAACTTGAATCAATTCGGGCCTCTCTGGATGAATGTGGTATATCAGCTCTTTCAAGTTTCTTGGATTGCAAACGGAGCTTGGATGCCAATGACGAATCAAACACTTCTGTGGAAAAAACTGGCATAGACCTGCTGTTCAAAATTATGCAATCTTTGAATGCACTGAGAGAAATAGTTGTTAAAGGTCTTGAAAGTGGTCTAAGAAATGATGCTCCTGATGCCTCGATTGCTATGCGTCAAAAGTGGCGTCTTTGTGAGATTGGACTTGAGGACTACTTATTTGTTCTTCTGAGTAGGTTTCTCAATATACTTGAAGCAACGGGAGGGGCTGACTGGCTTGCAGGAAATGTAGAATCAAAAAACGTAAGCTCTTGGAATGATCTTCTCGGTGTCCTTATCATTGGCATTAATCAGTTGCTCATATCTGGTTGGAAGCCAGAAGAGTGTACAGCTATTAAGAATGAGCTTTTTGCTTGGAAGGAGAGAGATCTCTCTGAAAGCGAAGGAAGTGAAGATGGCAAGAGAATCTGGGCATTGAGGCTCAAGGCAACTCTTGATAGAGCCAGAAGACTTACTGAAGTATACTCTGAAGCACTTCTTCAAATATTCCCTGAGAAAGTCCAGACGCTAGGAAAGGCTTTAGGTATCCCTGAAAACAGTGTAAGAACTTATGCCGAGGCTGAGATTCGCGCAAGTGTAATTTTTCAGGTCTCCAAACTTTGCACTATTCTGTTGAAAGCAGTCAGAATTACCCTTGGTTCTCAGGGTTGGGACATTCTTGTTCCAGGAGTGGCTTCTGGAACACTAATACAGGTGGAGAGCATTATCCCTGGCTCTCTACCAGCATCTGAAGGACCTATCATACTTTTGGTTGACAAAGCTGATGGAGATGAGGAGGTAACAGCTGCTGGAAATAACATAGTGGGCATTGTACTTCTACAAGAGCTTCCTCACTTATCTCATCTTGGTGTTCGGGCGAGACAAGCAAGTCCTTTTGAGAAAGTTGTTTTTGTGACTTGCGAAGACGATGATAGAGTGGCTGATGTTAAAAAACTTAATGGACAATTTGTGAGGTTGGAAGCATCCTCGATGGCTGTTAATTTGTTTTCATTGTCTGATAAGAACCCTGTTAATTCTGCAATAAATCTTTCAGCTGTTAATTCATCTGGAATCAAGTCTTCCGGGCTGGCTGATCCTCTTCGATCATCTGTGAAAGCTCCTTACTCCAGTCGGGTCTCTGTCAATGGCGTTCCTGCTGGAGGTGTCATGTTACTTGCAGATGCCGACGCCCAGATTTCCGGTGCCAAGGCTGCTGCTTGTAGTCGTTTGGCATCTTTGGCCGTTGTTTCCGAAACAATTTATAGCGAACATGGGGTCCCGGCTTCATTTGGTGTCCCTAAAGGAGCAGTGATACCATTTGGCTCCATGGAATTGGCGGTAGAGCAGAGTGGATCAATGGAAACTTTCAAGTCTTTAATGGACGAGATAGAAACGGCCAAACTCGAAGGTGGTGAGCTCGATAAACTCTGCTCCAACCTCCAGGAATTGATATCATCTCTCCAGGTTCCAAAGCAGATCATCGATAGCTTAGGGAGAATATTTTCTGGCAAAGCACGGTTAATCGTTCGATCTAGTGCGAATGTAGAAGATCTGGCTGGAATGTCTGCAGCTGGACTTTACGAATCGATTCCTAATGTCAGTCCTTCAAATCCGGTGGTGTTTGGAAATGCTGTTGGTCGAGTTTGGGCTTCGTTATATACTCGTAGAGCGGTTCTGAGTCGACGAGCGTCCGGAGTACCTCAAAAGGAAGCTTCAATGGCAGTTCTAGTTCAAGAAATGGTCTCACCGGACTTATCCTTTGTGTTACACACTCTCAGCCCAACTGATCGAGACAACAAATCCGTTGAGGCCGAGATTGCTTCCGGACTCGGCGAAACTCTGGCTTCCGGCACTCGTGGAACGCCCTGGCGTTTGTTGTCTGGGAAATTTGACGGCCTTGTCCGAACCCTAGCATTTGCGAACTTCAGTGAGGAACTGGTGGTTTTAGGATCAGGTCCCGCTGATGGTGAAGTGATCCGTTTGACGGTTGATTACAGTAAGAAACCATTGACTGTGGATGCCGTCTTTCGCCGTCAACTTGGCCAGCGTGTGTCGGCGGTTGGTTTTTTCCTTGAACAGAAGTTTGGTTGTGCCCAGGATGTCGAAGGATGTGTAGTTGGCAAAGATATCTTCGTCGTCCAGACCCGGCCCCAACCACTGTAA 3396 44.67 MKKKTKSESGSGETLLLKVRLDHQVKFGEHVVIIGSTKELGSWKKSVPLNWSENGWVCDLDLKGGDSVEYKFVIVRKDKSKLWEGGSNRVLQLPTNGVFSSVCRWNATNEALELLQLEGEVEEEEEEEEEKRAGVSNTESLVEVEMSPFVGQWQGKAVSFMRSNEHGNRENERKWDTSGLQGLALKLVEGDRNARNWWRKLEVVRELLVESLPTEACLEALIYSAIYLKWINTGQIPCYEDGGHHRPNRHAEISRLIFRELERISYKKAISPQEVLVLRKSHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLIATEAMLARITKIPGQYSEAFVEQFKIFHRELKDFFNAGSLAEQLESIRASLDECGISALSSFLDCKRSLDANDESNTSVEKTGIDLLFKIMQSLNALREIVVKGLESGLRNDAPDASIAMRQKWRLCEIGLEDYLFVLLSRFLNILEATGGADWLAGNVESKNVSSWNDLLGVLIIGINQLLISGWKPEECTAIKNELFAWKERDLSESEGSEDGKRIWALRLKATLDRARRLTEVYSEALLQIFPEKVQTLGKALGIPENSVRTYAEAEIRASVIFQVSKLCTILLKAVRITLGSQGWDILVPGVASGTLIQVESIIPGSLPASEGPIILLVDKADGDEEVTAAGNNIVGIVLLQELPHLSHLGVRARQASPFEKVVFVTCEDDDRVADVKKLNGQFVRLEASSMAVNLFSLSDKNPVNSAINLSAVNSSGIKSSGLADPLRSSVKAPYSSRVSVNGVPAGGVMLLADADAQISGAKAAACSRLASLAVVSETIYSEHGVPASFGVPKGAVIPFGSMELAVEQSGSMETFKSLMDEIETAKLEGGELDKLCSNLQELISSLQVPKQIIDSLGRIFSGKARLIVRSSANVEDLAGMSAAGLYESIPNVSPSNPVVFGNAVGRVWASLYTRRAVLSRRASGVPQKEASMAVLVQEMVSPDLSFVLHTLSPTDRDNKSVEAEIASGLGETLASGTRGTPWRLLSGKFDGLVRTLAFANFSEELVVLGSGPADGEVIRLTVDYSKKPLTVDAVFRRQLGQRVSAVGFFLEQKFGCAQDVEGCVVGKDIFVVQTRPQPL 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5317932 5329158 - BLOR10138 Blo02g00408 56638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00408 1131 Gene3D - 802 992 IPR013815 GO:0005524
Blo02g00408 1131 SUPERFAMILY Starch-binding domain-like 17 105 IPR013784 GO:0030246
Blo02g00408 1131 Coils Coil 107 134 - -
Blo02g00408 1131 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 841 1129 IPR002192 GO:0005524|GO:0016301|GO:0016310
Blo02g00408 1131 Pfam Starch binding domain 20 97 IPR002044 GO:2001070
Blo02g00408 1131 Gene3D Immunoglobulins 13 106 IPR013783 -
Blo02g00408 1131 PANTHER PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC 3 1130 - -
Blo02g00408 1131 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 7 107 IPR002044 GO:2001070
Blo02g00408 1131 SMART CBM_20_2 12 103 IPR002044 GO:2001070
Blo02g00408 1131 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 807 1129 - -
Blo02g00408 1131 Gene3D - 993 1129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00408 K15535 PWD; phosphoglucan, water dikinase [EC:2.7.9.5] - jre:108987321 1660.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00408 Blo07g00074 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g01059 Blo-Chr11:29042703 Blo02g00408 Blo-Chr2:5317932 1.44E-43 transposed
Blo02g00408 Blo-Chr2:5317932 Blo07g00074 Blo-Chr7:1097336 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0897 . . . . . Blo02g00408 Blo07g00074 . Bda13g00296 . Bpe13g00749 Bma02g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004547 2 0 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00408 Blo_Chr02 FPKM 14.551402 15.24111 2.730704 3.393183 1.733711 1.420484 2.428378 1.053254 1.214849 1.920541