Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00442 ATGCGAGGGAGAGTCGGCGGGAGGCGACGACTCGTGAGAGACGCAGTTCGGAGTGCGGCGTGCGGCGTGACGCTGTTGGTGTCGCGAGTCGGGATTCACGGCGAGCTAGGGCTCGCGTTCGGGTGGCGACGTCCGGCGAACGGGGAGACGAATCGGAGCTCTCGCGGGCGTAGTATCGGAAAGAGGAAGAAGCATAACGACGAAACGCTTATGCGCATGAAAGCTGGAGGTAAGGATTTGGGTTGTCTTGGCCTTGAGCCCTACACCCAAGAAAAAGTAGATCGAGTCCATGATAATAGAAACCAAGTAGGGGGTAACCTCCGGGAAGTTGCCAAAATGTACAACAATGTTGGAAATCAGCCTACGGCTCCACAGCCACCTTTGAGTTCTTCACCAAATCCATTAGGGAATGCATTTTACGGAGCTGGTTCAGGGCTTATTCGTGGTGGATTAGGTGCATATGGAGAGAAAATCTTTGGATCAAGCTCTGAATATGTTCAAAGCAATATAAGTAGATATTTTTCAGATCCCCAATATTATTTCCAAGTGAATGACCAGTATGTGAGAAACAAATTGAAGGTTGTTCTATTTCCTTTTCTTCACAGGGGCCATTGGACTCGAATAACAGAGCCAGTTGGAGGCAGGCTGTCTTATAAACCCCCAATTTATGATATTAATGCTCCAGACTTGTACATACCATTCATGGCATTTGGCAGTTTTGTTGTTCTTGCGGGGTTCTCATTGGGTCTTCAAGGAAAGTTTAGTCCAGAGTCTGTAAATTGGTTGTTCATCAAGGGATTGTTTGGCTGGTTTCTGCAAGTCATGCTGCTTAAAGTAACACTCCTTTCATTGGGGAGTGGCGAGGCACCCTTGTTGGATATTATTGCTTATGCCGGCTATTCTTTCCCTGGGATGTGTCTGGCTGCTGTCGGGAAGATTATGTGGAGGTACTCTTATTATATTTTAATGCCATGGACCTCTTTATGCATGGGAATTTTCTTGGTGAAAACAATGAAGAGAGTCCTTTTTTCTGAGGTGAGAAGTTATGATTCAAGCAGGCATCACTATCTCTTGCTTTTCGTAGCTTTGGCCCAGTTTCCTCTCTTCATATGGCTTGGCAACATTAGCATGAATTGGCTCTTTTAA 1146 46.34 MRGRVGGRRRLVRDAVRSAACGVTLLVSRVGIHGELGLAFGWRRPANGETNRSSRGRSIGKRKKHNDETLMRMKAGGKDLGCLGLEPYTQEKVDRVHDNRNQVGGNLREVAKMYNNVGNQPTAPQPPLSSSPNPLGNAFYGAGSGLIRGGLGAYGEKIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGSFVVLAGFSLGLQGKFSPESVNWLFIKGLFGWFLQVMLLKVTLLSLGSGEAPLLDIIAYAGYSFPGMCLAAVGKIMWRYSYYILMPWTSLCMGIFLVKTMKRVLFSEVRSYDSSRHHYLLLFVALAQFPLFIWLGNISMNWLF 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6068640 6075646 + BLOR10172 Blo02g00442 56672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00442 381 PANTHER INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN 113 378 - -
Blo02g00442 381 Pfam YIF1 153 372 IPR005578 GO:0005789|GO:0006888
Blo02g00442 381 MobiDBLite consensus disorder prediction 43 68 - -
Blo02g00442 381 PANTHER YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN 113 378 IPR005578 GO:0005789|GO:0006888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00442 K20362 YIF1; protein transport protein YIF1 - tcc:18602466 483.796
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00442 Blo07g00111 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00442 Blo-Chr2:6068640 Blo09g00211 Blo-Chr9:9421527 4.02E-14 dispersed
Blo02g00442 Blo-Chr2:6068640 Blo07g00111 Blo-Chr7:1560232 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1240 . . . . . Bpe14g01056 . . . . Cma06g01631 . Car06g01386 . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01851 Blo02g00442 Blo07g00111 Bda11g00475 . . . Bma02g00975 . . Cmo06g01629 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004914 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00442 Blo_Chr02 FPKM 6.601261 6.791682 0.579538 0.410085 0.0 0.0 0.0 0.112543 0.0 0.0