Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00445 ATGGAGAAGAAGATAGTTCTCAAAGATGACTCGGTTTTGCACCACCCGTATCTCCTTCTTCTCGTTCTAGCTCTTGGGTTTATCGTAATGGACCCGTTGCAAATGGGTCCAGTAGGAGGTCATGATTTCAAACCCGTGAAGCATGACATTGCTCCTTACAAGCAAGTGATGGAGAGATGGCCGAGGGACAATCTTAGTCACCTTGGGCGTGGAAAGTTGGAGTTCAAAGACCAAGTGTTTGGTCCTGAATCCTTGGAGTTTGATAGCTTCGGAAACGGCCCTTACACCGGTCTTGCTGATGGGCGCATTGTTCGATGGATGGGCCCGGACGTAGGGTGGGAGACCTTTGCATTTGTCTCCGTTAATTGGTCGGAGAGAGAGTGCGGGAGAGGGGTGAATTCGACGACGGCAAAGCAATGGAAGCATGAAAGGAAGTGTGGGAGACCATTGGGGGTGAGGTTTGACAAGAAGAGGGGAGATTTGTACATAGCAGATGCATATTATGGGTTGCTTGTGGTGGGTCCTCAAGGAGGATTAGCCAAGCCTTTGGCCACCCATGTTGATGCCTCCCCCATTCTCTTTGCTAATGACCTTGACATTCATTCTAATGGCTCTGTTTTCTTCACTGACACTAGCAACAGATACAACAGAGTGAATCATTTCTTCATATTGTTGGAAGGAGAGGCCACCGGCAGGCTTCTTAGGTATGACCCTCATACCAAAACAACTCATCTTGTTTTGGGCGGATTGGCTTTTCCAAATGGAGTTCAAATTTCCAAGGACCAAACCTTTCTACTCTTCACTGAAACAACCAATTGCAGGCAACTCCATTCCCATCTCCCATCTCCCATCTCCCATCTCCATTTCTTTACCGACCCACAATGCAACAGGATAATGAAACTTTGGCTGGATGGTCCAAGACGAGGAAACATGGAAGTCCACGCAGATTTGCCAGGTTTTCCTGACAACATAAGAATGAACGAGAAAGGAGAGTACTGGGTAGCCATAGATTGTTGTCGGACTCGAGCCCAAGAGATTCTGACAAACAATCCATGGATGAGAAGCCTTTATTTCAGGCTCCCATTGAGGATGAGCTTCTTAGCTCGTATGATGGGGATGAAGATGTACACAGTGATTGCTCGGTTGAACGAGGAGGGAGAGATCCTGCAAGTGTTGGAGGATAGGGATGGGGAGGTGATGAAGTTGGTGAGTGAAGTTAGAGAAGTGGATGGAAAGCTATGGATTGGGACTGTTGCTCATAACCATGTTGCCACCTTGTCTTACCCTTGA 1290 47.6 MEKKIVLKDDSVLHHPYLLLLVLALGFIVMDPLQMGPVGGHDFKPVKHDIAPYKQVMERWPRDNLSHLGRGKLEFKDQVFGPESLEFDSFGNGPYTGLADGRIVRWMGPDVGWETFAFVSVNWSERECGRGVNSTTAKQWKHERKCGRPLGVRFDKKRGDLYIADAYYGLLVVGPQGGLAKPLATHVDASPILFANDLDIHSNGSVFFTDTSNRYNRVNHFFILLEGEATGRLLRYDPHTKTTHLVLGGLAFPNGVQISKDQTFLLFTETTNCRQLHSHLPSPISHLHFFTDPQCNRIMKLWLDGPRRGNMEVHADLPGFPDNIRMNEKGEYWVAIDCCRTRAQEILTNNPWMRSLYFRLPLRMSFLARMMGMKMYTVIARLNEEGEILQVLEDRDGEVMKLVSEVREVDGKLWIGTVAHNHVATLSYP 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6098413 6099934 + BLOR10175 Blo02g00445 56675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00445 429 Gene3D - 290 429 IPR011042 -
Blo02g00445 429 Gene3D - 67 286 IPR011042 -
Blo02g00445 429 PANTHER STRICTOSIDINE SYNTHASE-RELATED 6 280 - -
Blo02g00445 429 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 13 289 429 - -
Blo02g00445 429 Pfam Strictosidine synthase 196 274 IPR018119 GO:0009058|GO:0016844
Blo02g00445 429 PANTHER STRICTOSIDINE SYNTHASE-RELATED 289 429 - -
Blo02g00445 429 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 13 6 280 - -
Blo02g00445 429 SUPERFAMILY Calcium-dependent phosphotriesterase 71 425 - -
Blo02g00445 429 Pfam Strictosidine synthase-like, N-terminal 80 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00445 - - - pvy:116135404 666.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00445 Blo-Chr2:6098413 Blo03g01022 Blo-Chr3:36525826 7.98E-96 dispersed
Blo02g00445 Blo-Chr2:6098413 Blo08g00066 Blo-Chr8:636968 3.95E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1250 . . . . . Bpe14g01059 . . . . . Cma14g01516 . Car14g01340 . . . . . . . . . . . . . . . . . . . Cone18ag0850 . . . . . Blo02g00445 . . . . . . . . . Cmo14g01550 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012010 0 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00445 Blo_Chr02 FPKM 87.18679 96.885422 68.281097 62.295311 98.564888 99.580238 93.584297 106.707024 112.389076 101.879372