Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00460 ATGGCTGAGCCTACATCCACTGCCCTAGGTCCTCGCTATGCACCTGATGATCCAACTCTTCCTAAGCCTTGGAAGGGTTTAATTGATGGAAGCACAGGTCTGTCATACTATTGGAACCCTGAAACGAACGTTACCCAGTATGAGAAGCCAGTAGCCACGACACCCCCGGTGGCTCTTGCTCCAACAGCAGGGGGGCATTTGTTGCTGTCAAATGGTATTACGGCTCAGATTGGGCAGCAAATCTCACAAGGCTCTCAACATGAAGGTCAGCAAATGAGTCATCTATCTCAGCATGCACACCTAGTGGCACAACAACAGAGTTCTATGGCGGTGCAGGCATCACACCAGGAAGGGATGCAAATCACCCAAGCAGTACAACATCATGGCTTGCAATCAAGTCAGGCCATGCACCAGCCGGGGCAATTGCAGCAACATAAGCAACACATGATGCCGTATCAGGGCCAACAAATGTTACAAAATACAAATCAGCATATGTCTCAGCCACCAAATCTGCAAGCTCTACAACACCCTGGGCAAATAATTCAACAACAAGCAGCCCCCCAAATTCCCCATAAGATTTCCCCAAGTCAAGGTTTACCAATGGGACAACATCAAGGGCAGTATGCACATCAACAATTTCATTACATGGCCTATCAGCCGAATACGGTACCTAAAATTCAGCAAAATTTACAGCAGCAGGTTCATCATAATGTCCAAGGGCAGCCGTTTGCAAATCAACAAGAGTATATGACTATGAACTCAAAGGAGGAAGATGATTTTCAGCATGGAAACCAAGTTGTATTTTCGCCTTCCCAGTTCCAGCAAACGGGCATCTCATCTGCTAACAATGTTCCTGCCGGAACGAATGCAATTCCCATGCAAAAGTTTGGTGCTCCATCAGGTCAAGCCCCACAATTTGGTGTTCCACCAGGTGGCATGCAGCAGACACCTCCAATGGCTCAATTACAGACAACTGGTTTGGATTTTAGGCCCCAACATCTTCCAAAGTTTCAGAATCAGATGAATCCTGCTTTAATGCATGGTCAGCAGGCTGGTGTGCCTCCTAATGACATGAAAATGGAAAATGAAGAAAATATGTCTGGAAGAGTAGGCAATGAATATTATACCAGCGGTAACAAGGATGGGCCTACCATTTCTTTGCAGCAACCGAAGCTTGCAACCATACCAATGGGAAGGAGTCATCAGGAGATGAGAATGGGTGGTGTTCCGTTTCAAAATACTAGGCCTGGTCAATCTAGTGGTTTGAATGCTGTAGCTGGATATTCCTTGCAGAATGTTTACAGTCAGGGTATGGGTGGTCAACCATTACCGAATGATGCTCAAATGAGGCTTCCTATTGGATCTTCAGATGTTACAATTATGTCGCCTGTTGAAAATTACTGCAAACAACATGAAGTTACTACAACGGGTGATAATGTTCCAGCACCATTTATAACATTTGAAGCTACTGGTTTCCCTCCAGAAATATTGAAAGAGGTAAGTTTCACACATTATTTACTAACTGGAGGAGCAAATGTCGTACGCTGCACTGCTATTGGTACACTTGCACATGCAACAATGGCCCTGTTTGGAGGCTGCAAAATGGATGGTTGGGGCCTATCTTGGGCATTTTTTAGAAGGATCTATTCCGCTGGTTTCTCGTCTCCAACACCGATTCAAGCACAAACATGGCCAATTGCCCTACAAGGTCGAGATATTTTAGCAATTGCTAAAACAGGGTCAGGGAAAACATTGGGCTATTTGATTCCTGCCTTTATTCTTCTAAGGCAACGCCATAATAATCCTCAAAATGGACCAACAGTGCTAGTTCTGTCTCCTACTCGGGAGCTTGCCACACAAATACAAGACGAGGCCATCAAGTTCGGTCGGTCTTCAAGGGTCTCTTGCACTTGCTTGTATGGTGGAGCTCCAAAGGGTCCTCAGCTAAAAGAGTTAGACAGAGGTGCAGATATTGTGGTGGCAACTCCTGGTAGGCTCAATGACATTCTTGAAATGAAAATGATAAATTTTAGACAAATTTCTCTGCTTGTGCTTGATGAAGCTGATCGCATGCTTGACATGGGGTTTGAACCTCAAATTCGTAAAATTGTGAATGAGATACCCCCTCGTAGGCAAACTCTTATGTATACAGCAACCTGGCCAAAAGAAGTTAGGAAAATTGCGGGTGATCTTCTTGTCAATCCTGTCCAGGTTAATATTGGCAGTGTCGATGAGCTTGCTGCAAACAAGGCTATCACACAGTTTGTTGAAATGGTTCCACAGATGGAAAAACAGAATCGCTTGGAGCAGATCCTACGTGCTCAGGAACGGGGCTCCAAGGTTATAATTTTCTGTTCCACAAAAAGATTGTGTGATAATCTTGCACGAAGCCTTGGACGCTCATTTGGAGCTGCTGCTATTCATGGAGACAAGTCTCAGGGGGAGAGAGACTGGGTATTAAATCAGTTCCGCAATGGAAAGTCTCCCATATTAGTTGCTACTGATGTTGCTGCCCGTGGTCTTGATATCAAGGATATCAGAGTGGTGATCAACTATGACTTTCCTACTGGAATTGAGGACTATGTTCACCGAATTGGAAGAACTGGACGAGCTGGTGCTACTGGAGTGTCTTATACCTTTTTCTCTGACCAGGACTGGAAATATGCAGCCGACTTAATTAAAGTACTTGAAGGGGCTAACCAACAAGTGCCCCCAGAGGTAAGAGAAATGGCTTTGCGAGGTGGACCTAGTTTTGGAAAAGATCGCGGAGGTATGAACCGTTTCGATCCTAATAGTGGTGGTGGCCGGTGGGATTCTACTGGCCGCGGCAGAATGAGAGATGGTGGTTTTGGTGGCCGTGGTGGCATGAGGGATGGCTTTGGCGATCGTGGCGGGAGAAATGATTTCTTTCCTGGTCGTGGTAACAGAGGTCGTGGTTTTGGTGGTCCTATGAGAGGAGGCCACGTTGGTTGGAGCCGGAATGACAATGGTGGCCCAAACAACCGGTATAACACTATGGATGGACGCGGACGAGGCCGAGGCGGTGGGCAAGGTCGATTTGACAACAGAAGAGACATTTCTGATAGGAGCAGGGGCAGAAGTTACAGTCGCAGCCCTGAAAGAGTTCGAACATGGGGTTACAGTAGAAGTCGTAGTAGTAGCCGCAGTAGCCGGAGCCGGAGCTGGAGTAGGAGCAGGAGCAGGAGCAGGAGCCGGAGCTGGAGCCGGAGCCGGAGTCGGAGCCGGAGCGGAAGCCGCTCTAGAGGTCATAATCGTAACTACAGCCGCAGCCGCAGCCGCAGCCTTGAGAGGCCTCGAGCACAAAACATTGATAAGGAGAATAGTAAATCTCCAAAACTTGGAACCACTTCTGAATCAGCGATGTTTACTACACCTTCTGTTAAGGACAGTAACACAGTCTTAGAAACCAGTGATTTGGGTCAACTACCTGTGATTGAAAGCGCTGCTCCTTGCTATCCAGAGACTGCAGCAGACGGTGCTGAAACAGTTATCAATTCTTGA 3522 46.85 MAEPTSTALGPRYAPDDPTLPKPWKGLIDGSTGLSYYWNPETNVTQYEKPVATTPPVALAPTAGGHLLLSNGITAQIGQQISQGSQHEGQQMSHLSQHAHLVAQQQSSMAVQASHQEGMQITQAVQHHGLQSSQAMHQPGQLQQHKQHMMPYQGQQMLQNTNQHMSQPPNLQALQHPGQIIQQQAAPQIPHKISPSQGLPMGQHQGQYAHQQFHYMAYQPNTVPKIQQNLQQQVHHNVQGQPFANQQEYMTMNSKEEDDFQHGNQVVFSPSQFQQTGISSANNVPAGTNAIPMQKFGAPSGQAPQFGVPPGGMQQTPPMAQLQTTGLDFRPQHLPKFQNQMNPALMHGQQAGVPPNDMKMENEENMSGRVGNEYYTSGNKDGPTISLQQPKLATIPMGRSHQEMRMGGVPFQNTRPGQSSGLNAVAGYSLQNVYSQGMGGQPLPNDAQMRLPIGSSDVTIMSPVENYCKQHEVTTTGDNVPAPFITFEATGFPPEILKEVSFTHYLLTGGANVVRCTAIGTLAHATMALFGGCKMDGWGLSWAFFRRIYSAGFSSPTPIQAQTWPIALQGRDILAIAKTGSGKTLGYLIPAFILLRQRHNNPQNGPTVLVLSPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQFVEMVPQMEKQNRLEQILRAQERGSKVIIFCSTKRLCDNLARSLGRSFGAAAIHGDKSQGERDWVLNQFRNGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSDQDWKYAADLIKVLEGANQQVPPEVREMALRGGPSFGKDRGGMNRFDPNSGGGRWDSTGRGRMRDGGFGGRGGMRDGFGDRGGRNDFFPGRGNRGRGFGGPMRGGHVGWSRNDNGGPNNRYNTMDGRGRGRGGGQGRFDNRRDISDRSRGRSYSRSPERVRTWGYSRSRSSSRSSRSRSWSRSRSRSRSRSWSRSRSRSRSGSRSRGHNRNYSRSRSRSLERPRAQNIDKENSKSPKLGTTSESAMFTTPSVKDSNTVLETSDLGQLPVIESAAPCYPETAADGAETVINS 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6543752 6549281 + BLOR10190 Blo02g00460 56690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00460 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 889 IPR027417 -
Blo02g00460 1173 Pfam WW domain 20 50 IPR001202 GO:0005515
Blo02g00460 1173 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 684 692 IPR000629 -
Blo02g00460 1173 SMART ultradead3 552 755 IPR014001 -
Blo02g00460 1173 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 278 1003 - -
Blo02g00460 1173 MobiDBLite consensus disorder prediction 1014 1038 - -
Blo02g00460 1173 Pfam DEAD/DEAH box helicase 557 727 IPR011545 GO:0003676|GO:0005524
Blo02g00460 1173 Pfam Helicase conserved C-terminal domain 764 872 IPR001650 -
Blo02g00460 1173 MobiDBLite consensus disorder prediction 915 1138 - -
Blo02g00460 1173 CDD WW 21 51 IPR001202 GO:0005515
Blo02g00460 1173 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 278 1003 - -
Blo02g00460 1173 MobiDBLite consensus disorder prediction 1 21 - -
Blo02g00460 1173 MobiDBLite consensus disorder prediction 1041 1060 - -
Blo02g00460 1173 Gene3D - 743 913 IPR027417 -
Blo02g00460 1173 SMART helicmild6 792 872 IPR001650 -
Blo02g00460 1173 MobiDBLite consensus disorder prediction 1096 1113 - -
Blo02g00460 1173 SUPERFAMILY WW domain 11 52 IPR036020 GO:0005515
Blo02g00460 1173 MobiDBLite consensus disorder prediction 1114 1138 - -
Blo02g00460 1173 Gene3D - 14 54 - -
Blo02g00460 1173 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Blo02g00460 1173 MobiDBLite consensus disorder prediction 79 116 - -
Blo02g00460 1173 SMART ww_5 19 52 IPR001202 GO:0005515
Blo02g00460 1173 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 564 738 IPR014001 -
Blo02g00460 1173 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Blo02g00460 1173 Gene3D - 459 742 IPR027417 -
Blo02g00460 1173 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 767 911 IPR001650 -
Blo02g00460 1173 CDD SF2_C_DEAD 752 881 - -
Blo02g00460 1173 MobiDBLite consensus disorder prediction 1061 1095 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00460 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - jre:109001168 1177.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00460 Blo-Chr2:6543752 Blo18g00330 Blo-Chr18:3430324 3.37E-16 dispersed
Blo17g00228 Blo-Chr17:2336938 Blo02g00460 Blo-Chr2:6543752 1.09E-62 dispersed
Blo02g00460 Blo-Chr2:6543752 Blo07g00769 Blo-Chr7:24850765 1.37E-146 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00460 Blo_Chr02 FPKM 6.725136 6.386829 10.017858 9.803016 18.973806 16.097944 17.297258 9.228204 9.990219 9.883323