Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00471 ATGGCCAAACACGAAGAGCTTCCCATCCCCGTCTTCTCAACCTTGGAGCCTGTCTACGGCGGAGGGTTTCAGCTCGAAGAAGCTCAGCTTCGATTCGATTTTTTGAAGTCCAAGTTTCTTCAAGTCTTCGGTCATCCCCCCGAGGTTTTCGCTCGCTCTCCCGGTAGAGTGAACTTGATCGGAGAGCACATTGATTACGAGGGATACTCGGTGTTGCCCATGGCGATTCGGCAAGATGCTATTGTCGCAATAAGGAAGAATTATGGTGGTGAAAAGCTTCTCAGAATTGCTAATGTGAATGATAAATATTCAATTTGCTCTTATCCTGCCGATCATGATCAGGAAGTTGATTTGAAGAATCACAAATGGGGGCATTACTTTATTTGTGGGTACAAAGGCTATAATGAATATGCTAGATCAAAAGGAGTTGATTCTGGTTTACCAGTCGGGCTAGATATTCTTGTCGATGGAACAGTTCCTACAGGTTCTGGGCTATCAAGCTCTGCTGCATTTGTTTGCTCTTCCACTATTGCTATTATGGCTGCCTTTGATGTGAATTTTCCAAAGAAAGAAGTTGCCCAGCTTACATGTGAATGTGAACGACACATTGGTACACAATCTGGTGGAATGGATCAGGCAATTTCCATTATGGCGAAATCTGGATTTGCGGAGTTGATTGATTTCAATCCAATTCGAGCCACTGATGTGAAACTTCCTGCTGGGGGAACTTTTATTATAGCTCATTCTCTGGCAGAATCTCAGAAAGCTGTCACTGCTGCTACAAATTACAATAACAGAGTTGTTGAATGTCGGCTGGCTGCAATTGTACTTGGGATAAAGCTTGGAATGAAACCACAAGAAGCAATATCGAAAGTGAAAACACTGTCTGATGTTGAAGGGCTGTGCCTATCATTTGCTTCTAGTCGTGGCTCTTCAGATCCCGTCGTTGCTGTAAAGGCGCTATTGAAGGAGGAACCTTATACTGCTACAGAGATTGAGGAAATCACGGAGGAAAATCTACCATCAGTCTTGGGCAATTCTCCTACTTCATTGGAAGTGTTGAAAGCTGCAAAGCACTTCAAGTTGCATCAGAGAGCCGCTCACGTCTATTCTGAAGCCAGAAGAGTTTATGCTTTTAAGGACACCGTATCATCAAATTTAAATGAGGAGGACTTGTTAAAGAAGCTTGGTGATCTTATGAACGACAGCCATCACAGCTGCAGTGTCCTTTATGAGTGCAGCTGCCCAGAGTTGGAAGAACTGGTAAATATATGCCGGGACAATGGTGCTTTTGGGGCGAGGCTAACCGGAGCAGGATGGGGTGGTTGTGCAGTTGCCCTGGTGAAAGAGAGCATAGTCCCCCAATTCATCCTTAATTTAAAGGAAAGCTTCTACCAATCAAGAATTGATAAAGGGATCGTCAGCAAGAATGATCTTGGTCTCTATCTCTTTGCTTCCAAGCCATCAAGTGGAGCTGCAATATTCAAGTTTTAA 1494 43.98 MAKHEELPIPVFSTLEPVYGGGFQLEEAQLRFDFLKSKFLQVFGHPPEVFARSPGRVNLIGEHIDYEGYSVLPMAIRQDAIVAIRKNYGGEKLLRIANVNDKYSICSYPADHDQEVDLKNHKWGHYFICGYKGYNEYARSKGVDSGLPVGLDILVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKEVAQLTCECERHIGTQSGGMDQAISIMAKSGFAELIDFNPIRATDVKLPAGGTFIIAHSLAESQKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQEAISKVKTLSDVEGLCLSFASSRGSSDPVVAVKALLKEEPYTATEIEEITEENLPSVLGNSPTSLEVLKAAKHFKLHQRAAHVYSEARRVYAFKDTVSSNLNEEDLLKKLGDLMNDSHHSCSVLYECSCPELEELVNICRDNGAFGARLTGAGWGGCAVALVKESIVPQFILNLKESFYQSRIDKGIVSKNDLGLYLFASKPSSGAAIFKF 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6700954 6704730 - BLOR10201 Blo02g00471 56701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00471 497 Pfam GHMP kinases N terminal domain 152 217 IPR006204 GO:0005524
Blo02g00471 497 SUPERFAMILY GHMP Kinase, C-terminal domain 243 470 IPR036554 -
Blo02g00471 497 ProSitePatterns Galactokinase signature. 55 66 IPR019741 -
Blo02g00471 497 Gene3D - 237 466 - -
Blo02g00471 497 PIRSF Galactokinase 23 497 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Blo02g00471 497 ProSitePatterns GHMP kinases putative ATP-binding domain. 159 170 IPR006203 GO:0005524
Blo02g00471 497 PANTHER BNAA01G32760D PROTEIN 1 496 - -
Blo02g00471 497 PANTHER MEVALONATE KINASE/GALACTOKINASE 1 496 - -
Blo02g00471 497 Pfam GHMP kinases C terminal 393 465 IPR013750 -
Blo02g00471 497 PRINTS Galactokinase signature 150 168 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Blo02g00471 497 PRINTS Galactokinase signature 364 378 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Blo02g00471 497 PRINTS Galactokinase signature 55 73 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Blo02g00471 497 Gene3D - 262 412 - -
Blo02g00471 497 PRINTS Mevalonate kinase family signature 432 449 - -
Blo02g00471 497 PRINTS Mevalonate kinase family signature 199 218 - -
Blo02g00471 497 PRINTS Mevalonate kinase family signature 53 77 - -
Blo02g00471 497 PRINTS Mevalonate kinase family signature 157 179 - -
Blo02g00471 497 SUPERFAMILY Ribosomal protein S5 domain 2-like 27 240 IPR020568 -
Blo02g00471 497 Pfam Galactokinase galactose-binding signature 38 86 IPR019539 -
Blo02g00471 497 Gene3D - 37 236 IPR014721 -
Blo02g00471 497 TIGRFAM gal_kin: galactokinase 35 469 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00471 K18674 GALK2; N-acetylgalactosamine kinase [EC:2.7.1.157] - zju:107407078 872.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00471 Blo07g00132 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00471 Blo-Chr2:6700954 Blo07g00132 Blo-Chr7:1807661 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g44 . . . . . Bpe14g01089 . . . . Cma06g01572 Cma14g01579 Car06g01336 Car14g01390 Sed02g1128 Cpe08g00143 Cpe03g01318 Bhi01g01101 Tan10g1088 Cmetu06g1064 . Hepe05g1365 . Lcy11g1328 . . . . . . . . Cone15ag0720 . . Lsi05g01410 . . Cme06g00801 Blo02g00471 Blo07g00132 . Bda13g00226 . . Bma02g00937 . . Cmo06g01566 Cmo14g01611 . . . . . . . . . . . . . Cla05g00717 Cam05g0784 Cec05g0790 Cco05g0786 Clacu05g0774 Cmu05g0739 Cre05g0813 . Csa03g01530 Chy06g00767 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005121 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00471 Blo_Chr02 FPKM 10.183616 11.06164 12.789022 12.17019 12.56293 14.012657 11.329987 17.08975 17.478693 20.161854