Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00478 ATGGAGGGAGACAGGAGAGTCGGGGTGGCCGTCGATTTCTCTCCGTGTAGCAAGAGCGCGCTGGTATGGGCTGTCGATAACGTTGTCCGAAAAGGCGATCATCTTGTACTCGTCACCGTTCGCCCCGAAGGAAACTACGAAGAAGGCGAGATCCAGCTGTGGGAAGCCACGGGATCTCCTTTCATTCCTCTGTCTGATTTCTCTGATCCTCACGTCATGAAGAAGTATGGAGTCAAGCCGGATGCCGACACCTTGGATATTGTTAGCACTGCTGCCAAGCAAAAAGAGGTTACGGTGCTTCTGAAGATTTACTGGGGAGATGCTCGTGATAAGATATGTGAAGCCATTGATCAAATCCCTCTGAGCTGTCTTATCATTGGTAATAGAGGTCTTGGCAAGATTAAGAGAGCTATACTGGGAAGTGTAAGCAACTACGTTGTGAGTAATGCTTCCTGTCCTGTAACTGTGGTGAAGAGCGGTGGAGCTCAGGGAAGCTAG 498 49.8 MEGDRRVGVAVDFSPCSKSALVWAVDNVVRKGDHLVLVTVRPEGNYEEGEIQLWEATGSPFIPLSDFSDPHVMKKYGVKPDADTLDIVSTAAKQKEVTVLLKIYWGDARDKICEAIDQIPLSCLIIGNRGLGKIKRAILGSVSNYVVSNASCPVTVVKSGGAQGS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6988987 6990126 + BLOR10208 Blo02g00478 56708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00478 165 CDD USP_Like 6 157 - -
Blo02g00478 165 Pfam Universal stress protein family 5 158 IPR006016 -
Blo02g00478 165 PRINTS Universal stress protein signature 4 22 IPR006015 -
Blo02g00478 165 PRINTS Universal stress protein signature 136 158 IPR006015 -
Blo02g00478 165 PRINTS Universal stress protein signature 118 130 IPR006015 -
Blo02g00478 165 PANTHER IMP2'P 4 159 - -
Blo02g00478 165 Gene3D HUPs 3 163 IPR014729 -
Blo02g00478 165 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00478 - - - jre:108994810 278.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00478 Blo12g00084 CCT
Blo02g00478 Blo07g00150 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01093 Blo-Chr1:38303915 Blo02g00478 Blo-Chr2:6988987 7.26E-46 dispersed
Blo02g00478 Blo-Chr2:6988987 Blo13g01058 Blo-Chr13:32847970 4.17E-51 dispersed
Blo03g01428 Blo-Chr3:40859133 Blo02g00478 Blo-Chr2:6988987 2.04E-12 dispersed
Blo15g00701 Blo-Chr15:22223526 Blo02g00478 Blo-Chr2:6988987 1.30E-08 dispersed
Blo12g00084 Blo-Chr12:5636560 Blo02g00478 Blo-Chr2:6988987 9.68E-37 transposed
Blo02g00478 Blo-Chr2:6988987 Blo07g00150 Blo-Chr7:1965308 2.78E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g76 . Blo12g00084 Bda03g01174 . Bpe04g01113 Bpe14g01101 . . . . . Cma14g01591 Car06g01325 Car14g01405 Sed12g0777 Cpe08g00153 Cpe03g01331 Bhi01g01084 Tan10g1071 Cmetu06g1226 . Hepe05g1388 . Lcy11g1343 . . . . . . . Cone14ag0723 Cone15ag0732 . . Lsi05g01588 . . Cme06g00783 Blo02g00478 Blo07g00150 Bda11g00504 Bda13g00215 . Bpe13g00693 . Bma06g01471 . . Cmo14g01623 . . . . . . . . . . . . . Cla05g00701 Cam05g0767 Cec05g0776 Cco05g0769 Clacu05g0757 Cmu05g0723 Cre05g0797 . Csa03g01513 Chy06g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008854 3 1 1 1 2 1 2 1 1 1 1 1 0 1 1 0 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00478 Blo_Chr02 FPKM 23.674122 23.247389 18.65489 20.900969 28.723022 24.547663 27.804146 27.482403 28.860615 29.456364