Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00479 ATGGCTCTACGAAAGTTTTTACCTTCTAGTGATGTGACTTCACCTAATATGAAACATTTAAGTTTTCCTGCTGAGAAACGCAAGGAAACTCATCTTGCTAATTCTGAGCCTGCCCATAATGTGGAGCCTGATGTGGAAGTTGACATTAGAGAAGTTTATTTTCTCATTATGCATTTTCTTTCTTCTGGGCCATGCCAAAGAACTTATGGACAGCTTTGGAATGAACTTCTTGAACATCAACTCTTACCCAGAAGATATCATGCTTGGTATTCAAGAAATGGGGGTTACTGCAGGGACGAGAATGATGATGGTCTATCCTTTCCTTTAAGTTACAATAAATTGGTGGAGAGGTATACCCACGTAAAAAAAGATCACTTGGTGAAGCTTTTGAAGCAGTTGCTACTATGTAAAAACCCTCCATTGCATGGCACAAATGGTGGAACTGCTCCAAATGCATATGATGTTCCTACTCTTTTGGGAACTGGCTCTTTTTCACTTTTAAGTTCTGACAGAGATGAAGGAATTAATGGACCAACTCATCCTTCTGCATATATGCGATGGCCCCATATGAAAGCTGATCAGGTTCGCGGATTAAGATTGAGGGAAATTTCAGGTGGATTTTCCAGACATCAACGTGCACCTTCTATACGTGCAGCATGTTATGCCATTGCAAAGCCATCAACCATGGTACAAAAGATGCAAAATATCAAGAAACTACGGGGGCATCAAAATGCTGTCTACTGTGCAATATTTGATCGATTGGGAAGGTATGTCGTTACTGGGTCAGATGATCGCCTTGTAAAAATTTGGTCAATGGAAACTGCATATTGTTTGGCAAGCTGCCGTGGACACGAAGGTGATATTACTGACTTAGCTGTCAGTTCCAACAATGCTGTGGTTGCATCCTCTTCCAATGACTTTGTCATTCGTGTTTGGCGTCTTCCCGATGGGCTGCCAATTTCAGTTTTGCGAGGACATTCGGGCGTTGTTACAGCCATTGCATTTAGTCCAAGGCCTGGATACCAGCTTCTATCATTATTCGGGTTCACTATCCAACAATGGCATCAGGGTACACTGTTTGAGAAGTCAGACACATTTAGAGAAGAACCACCACTGCGAGGGTTGCCGTACTTGAAGGCAGAAAGAAATTTGAAAGAAATTTTGGAAGGAGAAAGGGTCAATGAAGCAACGGCAAGCGATTTGGAAGACATAATGAGAAGTGGGTTTTGCTCGCCGGAGGAGATGGATTTAGAATCTTCGAGGCATCAGCCGTTGTTCACCATAGCAGAAGCTCAGAGGAGGAAACGAGGAAGAAAAACTCAAAGAGATGAAACAGGGAGAAAAGAAGAGCCGGAGAAAATGGCGTCGAAGGTTGCCTCTTCAGACGGCTTATCGGCAACGATTATATGGATAGGAATTCCGGTGAGTTCGCCGGCGACCATAGGAACAGGGGCTGCAGAGATTAGAAACCCATTTAGGAGCTCATCTGATGATGGAACCTGTAGGCTGTGGGATGCTAGGAACTCTTCGCAGCATAATCCACGAATTTACATGCCAAAGCCATTAGATTCTGTAACTGGAAGGAGCAGTGGCTCCTCTTCTAGTACTGTTTCTCATAATCATCAAATATTTTGCTGTGCTTTTAATGCCAACGGGACCATTTTTGTCACTGGTAGCTCAGACACTGTTGCAAGGGTATGGAATGCATGTAAACCAAACATTGATAACCCAGACCAACCTAATCATGAGATAGATGTGTTAGCGGGCCATGAGAATGATGTTAATTATGTGCAATTTAGTGGATGTGCTGTGGCCTCAAGATTTATTACAGCCGACACTGTAATAGAAGACTGTGGTCACAGATTTAGAAATTCCTGGTTTACTTATGACAATATAGTTACCTGTTCCCGTGATGGTAGTGCAATTATTTGGGTACCTAGATCACGTAGATCACATGGGAAAGCTGGACGATGGACTAGGGCCTATCATTTAAAAGTACCTCCTCCACCAATGCCTCCACAACCTCCACGAGGAGGTCCTCGTCAAAGAATTCTTCCAACTCCTCGTGGTGTTAATATGATCATTTGGAGCTCAGACAACCGCTTCGTCCTTGCTGCCCTAATGGATTGTAGAATATGTGTTTGGAATGCTTCTGATGGTAGCTTAGTGCACTCTTTGACAGGTCATACAGAATCAACATACGTTCTGGATGTTCATCCTTTCAATCCTCGGATAGCTATGAGTGCTGGTTATGATGGAAAAACTATAGTTTGGGATATATGGGAAGGAACTCCTATTCAGATATACGACATTTCTCGGTTCAAACTCGTTGATGGAAAGTTTTCATTGGATGGAACATCAATAATTCTTTCAGATGATGTGGGTCAGCTGTATGAATTAAGCACAGGACAAGGAGAGTCCAAACAGGATGCCATGTATGACCAGTTCTTCCTAGGTGATTATCGGCCACTTGTTCAAGATACTTTTGGAAATGTAGTTGACCAAGAAACTCAACTTGCTCCTTACAGGCGGAATATGCAAGATCTTCTTTGTGACTCAGGCATGATACCTTACCCAGAACCTTACCAGAGTATGTACCAGCAGAGACGGTTAGGAGCTCTGGGTATTGAATGGCGGCCTTCTTCTCTAAAGTTTGCTGTTGGGCCTGACTTCAGTCTTGGTCCAGCATATCAGATGCTGCCTTTGGCGGACTTGGATTTATTGATTGAACCACTTCCAGAGTTTGTTGATGCAATGAATTGGGAGCCAGAAAATGAAGTACAAAGTGATACTACTGATTCAGAGTATAATGTCCCTGAAGACTATTCTACCGGAGGAGAGCAGGGGAGTTTGAATTCGAATTCGTCCATAGACCCAGAATGCAGTGGTGGAGACACTGGAGGCGAAGATGCCCTAAGAGATCACCTTCGTAGATCAAAAAGGAAAAAACATAAGATGGAGATCATGACATTTTCTGGAAGACGTATTAAAAGGAGGAATTTAGACGAGGATGATGGACATCCTATTAAAAGTAACAGAAATAGGAAATTGAAAGTTCATTTAAAACCTTCAAAGAGGAAAATAGCATCAAAATCATTGAGGCCTCAAAGAGCTGCTGCACGCAATGCTCGTCATTTCTTTTCTAAACTAAAAGGAACATCTACTGATGTAGAGGATGAGGATGGCTCAGGAAGTGATTCATCAGATAGTGAATCTATCTTGGAAGATTCGATCATCGTGAGTGATGATGATTCTGATAAGTCTTTGCAGAACATCACCAAGCTTTCAAAAGGAAAAGAGGTATACATGGACGAACCTGAGGATGTAGTTCAACCTTTTGAACTGCCAGAATCTCATGTGAATTCTGTCAATAGGCGGAGGTTGATCCTCAAGCTTCCAATTAGAAATTTTAACAGGCCTTTGCCCCCAGAGAATATTATTCACAAATGTTCAAACTCGATCAATGGTGTTGGCTCATCATCAAAAGCTCCTTGGGAAGCTGCTGAGATGAATCACAGACAGAAAAGCCTAGAAAAACCAAATGACTCTCATAATGTAGACATTGCTGCTGAAGTAGGGAGAATACAAGACGAAATTGAAAATCATTTTAATCACTCTATCCCCAATAAAAATGGAAGCATTAAATGGGGAGGGTTCAAGACACGCACATCTAAGCGTCCAAGATTGGGGGAAACGATTACTTTTGATGCACATATGAGGTCTAGTTCTTGTCTTGATGATCATAATGACATGGAGAAGAGCAACCTCCATGAATACGTAAGACCAGAAAATTATTCTGGCAATGTAATGGAAGTTGGGGAATATTCAAATGTTCAAGACATTAGAGATGGTACGGCTGAGGGAGTTTTTGAGCCAACCAGCAGCCGAGCAACAAAAACTTTTGTTAAGGCTGGAGATCCTCATGAAAATCAAAATCTGGATCTTGTGGCTCCTGATGATGCCACCACCTCATCTACCTGGAACGAAATTAATTCCTCTTCTGAATTGTGTAATAGCACTATACCTGTCTCGACAAAAATAAGGTTGAAGGCAAACATTGATCCTGCTTCCCCAAAATGCGAAAGAAAATCTTTGTTAGCAAGTATGAGTAATGGCAAACATGATGTATTACCTGGAAGTCCTAAGTATCCATTAATTCCCCCTGACGATGGCATCGACAGAAGTAATTTGGATAACAGGAGTGAGGGTTCACAAAAAGATGACATGTTGGAAGATAAGTCGATGCACTCAAATCCTAACAAAATGTACAGTGTTGTCTACAGAAGATTGAAGTCACACAAAGGAAGAACCAGCAATAGCAATTCACATAACGGAATAGAGGAAAATGTAGGTACAGTTGATGTGGCCCACTGGACTCAATCATTGAGGTCAAAGGCTTTCGTAAGTGATTCAAATAATCTGAGTGACAATCTTAAGTACGAGGAAGTTCTGGACTTGGAACATATGTCACGAAATTTTCAGAATACCTCAACAAGCAGATATCAATTTAAGGATGAGGTGTGGGGATCGAAATCAAGTTTGACAGTTGGACTAAGGTCTACTAGAAATAGAAGAGCTAATTCTGCTCGTGACACAAGTCCAATGGATAAAAGGAAGTCTCATCTAATATCAAGAAAAGGATCGTGGTTAATGATGTCTGTACATGAAGGTGGCTCCCGTTATGTTCCCCAGCTTGGGGATGAAGTTGTGTATTTGAGACAGGGGCATCAAGAATATATTGATTATTGTCGCTCAAGAGAAGTGGGGCCTTGGATTTCAATGAAGGGAACCCTTAGGGCAGTCGAATACTGTAAAGTTGTTGAACTTGAGTATTCCACAGTTTGTGGATCTGGGGCTAGCTGCTGCAAGATGACACTTGAATTTGTAGATCCCGATTACAGTGTATCAAGTGGATCTTTCAAACTGTCTCTTCCTGAAGAGACTAGTTTCCCAGATTTTCTTGTTGAAAGAAGTCGATTTGAAACTTCTTTACAGAGAAATTGGAGATTCAGGGATAAATGCAAAGTGTGGTGGAGAAATGAGGGGGAAGAAGATGGTAGTTGGTGGGAGGGTCGTATTACTGCTGTGGAGGCAAAATCTTCTGAATTTCCCGAAAGTCCTTGGGAGAAATACAGAATACGTTATAAGAGTGAACCAACGGACACCCATTTACATAGTCCTTGGGAGCTCTTTGACGATGATACACATTGGGAACAGCCTCGAATTGATCATGAATGTAAAGCCAACTTATTATCTGCCTTGGACAAATTAGAGTTGGGTAGTACAGGCCAGGATCGATATGGAGTTCAGGAATTGAGACGTGTTTCTCAGCGACTGCAGTTTAGGAACCGGTTTCCAGTTCCATTAACTCTTGAAGTGATACATTTAAGACTAGAGAGTGATTATTACCGGAGTATCGAAGCTTTGAAGCATGATTTTGTGGTCATGCTGTCAAATTTTGAAGCCTACTCAGCAAAGAACGAAAGTTTGTTAAAAAAATTAAAAAGATTATCAGAGTGGTTCAATAGGACACTGTCTTCATCATAG 5547 41.68 MALRKFLPSSDVTSPNMKHLSFPAEKRKETHLANSEPAHNVEPDVEVDIREVYFLIMHFLSSGPCQRTYGQLWNELLEHQLLPRRYHAWYSRNGGYCRDENDDGLSFPLSYNKLVERYTHVKKDHLVKLLKQLLLCKNPPLHGTNGGTAPNAYDVPTLLGTGSFSLLSSDRDEGINGPTHPSAYMRWPHMKADQVRGLRLREISGGFSRHQRAPSIRAACYAIAKPSTMVQKMQNIKKLRGHQNAVYCAIFDRLGRYVVTGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHSGVVTAIAFSPRPGYQLLSLFGFTIQQWHQGTLFEKSDTFREEPPLRGLPYLKAERNLKEILEGERVNEATASDLEDIMRSGFCSPEEMDLESSRHQPLFTIAEAQRRKRGRKTQRDETGRKEEPEKMASKVASSDGLSATIIWIGIPVSSPATIGTGAAEIRNPFRSSSDDGTCRLWDARNSSQHNPRIYMPKPLDSVTGRSSGSSSSTVSHNHQIFCCAFNANGTIFVTGSSDTVARVWNACKPNIDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFITADTVIEDCGHRFRNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKAGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIIWSSDNRFVLAALMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIQIYDISRFKLVDGKFSLDGTSIILSDDVGQLYELSTGQGESKQDAMYDQFFLGDYRPLVQDTFGNVVDQETQLAPYRRNMQDLLCDSGMIPYPEPYQSMYQQRRLGALGIEWRPSSLKFAVGPDFSLGPAYQMLPLADLDLLIEPLPEFVDAMNWEPENEVQSDTTDSEYNVPEDYSTGGEQGSLNSNSSIDPECSGGDTGGEDALRDHLRRSKRKKHKMEIMTFSGRRIKRRNLDEDDGHPIKSNRNRKLKVHLKPSKRKIASKSLRPQRAAARNARHFFSKLKGTSTDVEDEDGSGSDSSDSESILEDSIIVSDDDSDKSLQNITKLSKGKEVYMDEPEDVVQPFELPESHVNSVNRRRLILKLPIRNFNRPLPPENIIHKCSNSINGVGSSSKAPWEAAEMNHRQKSLEKPNDSHNVDIAAEVGRIQDEIENHFNHSIPNKNGSIKWGGFKTRTSKRPRLGETITFDAHMRSSSCLDDHNDMEKSNLHEYVRPENYSGNVMEVGEYSNVQDIRDGTAEGVFEPTSSRATKTFVKAGDPHENQNLDLVAPDDATTSSTWNEINSSSELCNSTIPVSTKIRLKANIDPASPKCERKSLLASMSNGKHDVLPGSPKYPLIPPDDGIDRSNLDNRSEGSQKDDMLEDKSMHSNPNKMYSVVYRRLKSHKGRTSNSNSHNGIEENVGTVDVAHWTQSLRSKAFVSDSNNLSDNLKYEEVLDLEHMSRNFQNTSTSRYQFKDEVWGSKSSLTVGLRSTRNRRANSARDTSPMDKRKSHLISRKGSWLMMSVHEGGSRYVPQLGDEVVYLRQGHQEYIDYCRSREVGPWISMKGTLRAVEYCKVVELEYSTVCGSGASCCKMTLEFVDPDYSVSSGSFKLSLPEETSFPDFLVERSRFETSLQRNWRFRDKCKVWWRNEGEEDGSWWEGRITAVEAKSSEFPESPWEKYRIRYKSEPTDTHLHSPWELFDDDTHWEQPRIDHECKANLLSALDKLELGSTGQDRYGVQELRRVSQRLQFRNRFPVPLTLEVIHLRLESDYYRSIEALKHDFVVMLSNFEAYSAKNESLLKKLKRLSEWFNRTLSSS 1848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7041480 7059510 + BLOR10209 Blo02g00479 56709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00479 1848 MobiDBLite consensus disorder prediction 1393 1415 - -
Blo02g00479 1848 MobiDBLite consensus disorder prediction 512 534 - -
Blo02g00479 1848 PANTHER WD REPEAT DOMAIN 9 40 345 - -
Blo02g00479 1848 MobiDBLite consensus disorder prediction 998 1012 - -
Blo02g00479 1848 Gene3D - 1780 1848 IPR036427 GO:0005515
Blo02g00479 1848 MobiDBLite consensus disorder prediction 925 985 - -
Blo02g00479 1848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 274 - -
Blo02g00479 1848 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 322 IPR001680 GO:0005515
Blo02g00479 1848 Gene3D - 682 813 IPR015943 GO:0005515
Blo02g00479 1848 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Blo02g00479 1848 SMART WD40_4 274 313 IPR001680 GO:0005515
Blo02g00479 1848 SMART WD40_4 678 716 IPR001680 GO:0005515
Blo02g00479 1848 SMART WD40_4 530 568 IPR001680 GO:0005515
Blo02g00479 1848 SMART WD40_4 719 759 IPR001680 GO:0005515
Blo02g00479 1848 SMART WD40_4 580 645 IPR001680 GO:0005515
Blo02g00479 1848 SMART WD40_4 316 355 IPR001680 GO:0005515
Blo02g00479 1848 SMART WD40_4 232 271 IPR001680 GO:0005515
Blo02g00479 1848 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 493 1846 - -
Blo02g00479 1848 ProSitePatterns Trp-Asp (WD) repeats signature. 746 760 IPR019775 -
Blo02g00479 1848 Pfam WD domain, G-beta repeat 538 568 IPR001680 GO:0005515
Blo02g00479 1848 Pfam WD domain, G-beta repeat 234 271 IPR001680 GO:0005515
Blo02g00479 1848 Pfam WD domain, G-beta repeat 277 312 IPR001680 GO:0005515
Blo02g00479 1848 Pfam WD domain, G-beta repeat 720 759 IPR001680 GO:0005515
Blo02g00479 1848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 314 - -
Blo02g00479 1848 Gene3D - 208 466 IPR015943 GO:0005515
Blo02g00479 1848 MobiDBLite consensus disorder prediction 925 961 - -
Blo02g00479 1848 SUPERFAMILY Bromodomain 1785 1845 IPR036427 GO:0005515
Blo02g00479 1848 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 40 345 - -
Blo02g00479 1848 ProSiteProfiles Trp-Asp (WD) repeats profile. 726 768 IPR001680 GO:0005515
Blo02g00479 1848 MobiDBLite consensus disorder prediction 998 1073 - -
Blo02g00479 1848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 536 568 - -
Blo02g00479 1848 Gene3D - 489 660 IPR015943 GO:0005515
Blo02g00479 1848 MobiDBLite consensus disorder prediction 428 456 - -
Blo02g00479 1848 MobiDBLite consensus disorder prediction 1371 1420 - -
Blo02g00479 1848 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 568 IPR001680 GO:0005515
Blo02g00479 1848 MobiDBLite consensus disorder prediction 1013 1032 - -
Blo02g00479 1848 CDD Bromo_WDR9_I_like 1721 1848 - -
Blo02g00479 1848 MobiDBLite consensus disorder prediction 427 458 - -
Blo02g00479 1848 SUPERFAMILY WD40 repeat-like 229 789 IPR036322 GO:0005515
Blo02g00479 1848 PANTHER WD REPEAT DOMAIN 9 493 1846 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00479 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 1533.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00479 Blo07g00153 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00479 Blo-Chr2:7041480 Blo07g00155 Blo-Chr7:2036882 6.03E-27 dispersed
Blo14g00225 Blo-Chr14:1986510 Blo02g00479 Blo-Chr2:7041480 3.99E-11 transposed
Blo02g00479 Blo-Chr2:7041480 Blo07g00153 Blo-Chr7:1999644 4.12E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00479 Blo_Chr02 FPKM 3.071715 4.140789 5.982136 7.273802 1.609599 1.229394 1.944845 2.203728 2.426343 3.663956