Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00486 ATGTCGTTGAGACCGAACGCCAGGACGGAGGTTCGGCGCAACCGCTACAAGGTCGCTGTCGATGCGGAAGAGGGTCGCCGGAGAAGGGAGGATAATATGGTCGAGATCCGCAAAAGTAAGCGCGAAGAAAGCTTGCAAAAGAAGCGCCGTGAAGGTCTTCAGGCTCAGCAGTTCCCTAACGCTGCACATGGTTCAGCCGTTGAGAAGAAGCTAGAAAGCCTTCCTTCAATGGTTGCTGGGGTCTGGTCTGACAACAGCGGATTGCAGCTGGAGGCAACGACACAGTTTCGGAAATTGCTTTCCATTGGCACCCCTCCGATAGAGGAAGTTATTCAATCTGGGGTTGTTCCTCGCTTTGTGGAGTTTCTTGTCAGAGAGGATTTTCCGCAGATTCAGTTTGAGGCTGCTTGGGCTCTCACGAACATAGCATCTGGTACCTCGGAGAATACAAAGGTGGTGATTGATCATGGAGCAGTTCCTATCTTCGTGAAGCTCCTTGGTTCTCCAAGTGATGATGTTAGAGAGCAGGCAGTGTGGGCATTAGGAAATGTGGCTGGTGACTCTCCTCGATGCCGTGATCTTGTCCTTGGCCATGGAGCGTTGATTCCACTTTTAGCTCAGTTGAATGAGCATGCTAAACTTTCTATGTTGAGAAATGCCACATGGACACTTTCAAACTTCTGCAGGGGCAAACCACAGCCTCCCTTTGATCAGGTGAAGCCAGCACTTCCAGCTCTTGAGCGTCTAGTTCATTCTAATGACGAAGAAGTTCTGACTGATGCATGCTGGGCGCTTTCATATCTTTCTGATGGAACTAATGATAAAATTCAAGCAGTTATTGATGCGGGTGTTTGTCTCCGACTTGTGCAGCTCCTCCTACATCCATCTCCTTCTGTCCTTATTCCAGCATTACGCACAGTTGGAAATATTGTGACGGGTGATGATATTCAGACCCAGTGGATAATCAACCATGGTGCACTACCGTGCCTTCTCAGCCTTTTAACCCACAATCATAAAAAGAGCATAAAGAAGGAAGCATGTTGGACTATTTCAAACATTACTGCTGGAAACAGGGAACAGATACAGTCTGTAATTGAAGCTGGGTTAGTAGCTCCTTTAGTTAATCTGCTTCAAAATGCTGAGTTTGATATAAAGAAAGAGGCTGCATGGGCTATATCAAATGCTACTTCTGGTGGTACTCACGAACAAATTAAATTTCTGGTCAATCAAGGATGTATAAAGCCATTGTGTGATCTTCTTGTATGCCCTGATCCAAGGATTGTTACAGTCTGTTTGGAAGGGTTAGAGAATATTCTAAAGGTTGGGGAAGCTGAGAAAGGTTTAGTCAGTGGTGGAGACGTTAATGTATATGCCCAGTTGGTTGATGATGCTGAGGGTTTAGAAAAGATTGAAAATCTTCAGAGTCATGATAACAACGAGATTTATGAGAAGGCAGTCAAACTGCTCGAAACATATTGGTTGGAGGAGGAAGATGAGACGCAGGAAACAGGGTTGTGGTTGGATGAAGTGGAAGTTTATGATGAAGGTGATGGACTATATGTTGGGGTCCATGGGTCAGGTCGCTCAGGGCATCTTGTCTAG 1602 46.07 MSLRPNARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPNAAHGSAVEKKLESLPSMVAGVWSDNSGLQLEATTQFRKLLSIGTPPIEEVIQSGVVPRFVEFLVREDFPQIQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCLRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQWIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQSVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKFLVNQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKGLVSGGDVNVYAQLVDDAEGLEKIENLQSHDNNEIYEKAVKLLETYWLEEEDETQETGLWLDEVEVYDEGDGLYVGVHGSGRSGHLV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7272777 7276347 + BLOR10216 Blo02g00486 56716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00486 533 MobiDBLite consensus disorder prediction 37 66 - -
Blo02g00486 533 PANTHER IMPORTIN ALPHA 2 504 - -
Blo02g00486 533 Gene3D - 72 494 IPR011989 -
Blo02g00486 533 Gene3D - 11 50 IPR036975 GO:0006606
Blo02g00486 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 241 283 IPR000225 GO:0005515
Blo02g00486 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 368 396 IPR000225 GO:0005515
Blo02g00486 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 157 IPR000225 GO:0005515
Blo02g00486 533 SUPERFAMILY ARM repeat 6 498 IPR016024 -
Blo02g00486 533 PIRSF Importin_alpha 2 512 IPR024931 GO:0005737|GO:0006606|GO:0061608
Blo02g00486 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
Blo02g00486 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 368 IPR000225 GO:0005515
Blo02g00486 533 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Blo02g00486 533 Pfam Atypical Arm repeat 455 502 IPR032413 -
Blo02g00486 533 Pfam Armadillo/beta-catenin-like repeat 273 311 IPR000225 GO:0005515
Blo02g00486 533 Pfam Armadillo/beta-catenin-like repeat 146 185 IPR000225 GO:0005515
Blo02g00486 533 Pfam Armadillo/beta-catenin-like repeat 357 396 IPR000225 GO:0005515
Blo02g00486 533 Pfam Armadillo/beta-catenin-like repeat 242 269 IPR000225 GO:0005515
Blo02g00486 533 Pfam Armadillo/beta-catenin-like repeat 317 355 IPR000225 GO:0005515
Blo02g00486 533 Pfam Armadillo/beta-catenin-like repeat 401 438 IPR000225 GO:0005515
Blo02g00486 533 Pfam Armadillo/beta-catenin-like repeat 188 229 IPR000225 GO:0005515
Blo02g00486 533 Pfam Armadillo/beta-catenin-like repeat 105 144 IPR000225 GO:0005515
Blo02g00486 533 SMART arm_5 400 440 IPR000225 GO:0005515
Blo02g00486 533 SMART arm_5 357 397 IPR000225 GO:0005515
Blo02g00486 533 SMART arm_5 231 270 IPR000225 GO:0005515
Blo02g00486 533 SMART arm_5 272 312 IPR000225 GO:0005515
Blo02g00486 533 SMART arm_5 146 186 IPR000225 GO:0005515
Blo02g00486 533 SMART arm_5 103 144 IPR000225 GO:0005515
Blo02g00486 533 SMART arm_5 314 355 IPR000225 GO:0005515
Blo02g00486 533 SMART arm_5 187 229 IPR000225 GO:0005515
Blo02g00486 533 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Blo02g00486 533 PANTHER IMPORTIN SUBUNIT ALPHA 2 504 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00486 K15042 KPNA5_6; importin subunit alpha-6/7 - vvi:100248248 941.414
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00486 Blo07g00158 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00486 Blo-Chr2:7272777 Blo11g00528 Blo-Chr11:4880766 0 dispersed
Blo02g00486 Blo-Chr2:7272777 Blo07g00158 Blo-Chr7:2056960 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g109 . . . . . Bpe14g01107 . . Cmo08g01226 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0734 Cone15ag0744 Cone7ag0115 Cone4ag0119 . Csa06g01764 . . Blo02g00486 Blo07g00158 Bda11g00512 Bda13g00208 . Bpe13g00685 Bma02g00920 Bma06g01480 . . . Cma08g01256 . Car08g01127 . . Cpe17g00048 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000840 4 2 4 5 4 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 3 2 2 2 2 2 4 7 3 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00486 Blo_Chr02 FPKM 91.571999 99.928711 49.477688 47.482376 49.15836 47.376324 48.199757 41.590614 42.72427 42.75359