Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00489 ATGGTTAACGTGGGCCGAGATTGGGATTTGGATACTAATGGCGGCCATTCATATTTACGTTGCAGACGAAGCAGATCGCTAGCCTGCAGTAGAATGTTGCCAACAGTTGGCTCGGATGATTTTGTGCATTACGAGCCGATTCCCGTGAAAGTTGTCACTCACACTAATAAGAATGGTCGTTACAAAGGTAGAGATTTCATACTTTATCGCACTACATCGCATCATGATTTTCAAAACCTTATTTTGTGGGTTGCCACATATGAAAACCCAATGAAAACTATTCGACAAGGCCACTCTATAATCCCTCCGGCAAAGGTGTTCAAGGCCTTCGTTCTTGAATCAGACACTCTCATCCCTAAGATCATCCCTCACGCAATCCAGGGCGTCGAAATCCTCGAGGGCGACGGCGAGCCTGAGTCTGTCAAGAAGATTTCCTTCGGCCAGGGGAGCCAATTCAGCTACATGAAGCACAAGATCGAGTCGTTGGATACAAAAAATTTGACCTACTGCTACACGATAATAGAAGGAGACGCCATTGGAGAGTGGATCGAGAAGGTGGAGAATGAGATTAAGATATTGCCATCTGCAGATGGAGGGTCTGTAGTGAAGAGCACAAACGAGTACTACACAAAGGGAGATTATGAAGTGAAGGAAGAGCAAATCAAGGCAGGGAAAGAGAAGGGTCTTGGCCTCTTCCTTGTTAAGAAAAATCACCTAAATCAATCATGTGGAATATGA 738 44.99 MVNVGRDWDLDTNGGHSYLRCRRSRSLACSRMLPTVGSDDFVHYEPIPVKVVTHTNKNGRYKGRDFILYRTTSHHDFQNLILWVATYENPMKTIRQGHSIIPPAKVFKAFVLESDTLIPKIIPHAIQGVEILEGDGEPESVKKISFGQGSQFSYMKHKIESLDTKNLTYCYTIIEGDAIGEWIEKVENEIKILPSADGGSVVKSTNEYYTKGDYEVKEEQIKAGKEKGLGLFLVKKNHLNQSCGI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7307919 7310271 + BLOR10219 Blo02g00489 56719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00489 245 Pfam Pathogenesis-related protein Bet v 1 family 102 221 IPR000916 GO:0006952
Blo02g00489 245 PANTHER ALLERGEN PRU AV, PUTATIVE-RELATED 99 235 - -
Blo02g00489 245 PANTHER - 99 235 - -
Blo02g00489 245 CDD Bet_v1-like 101 232 - -
Blo02g00489 245 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 176 208 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo02g00489 245 SUPERFAMILY Bet v1-like 101 239 - -
Blo02g00489 245 Gene3D - 94 242 IPR023393 -
Blo02g00489 245 PRINTS Major pollen allergen Bet V1 signature 137 146 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo02g00489 245 PRINTS Major pollen allergen Bet V1 signature 172 185 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo02g00489 245 PRINTS Major pollen allergen Bet V1 signature 90 110 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo02g00489 245 PRINTS Major pollen allergen Bet V1 signature 113 123 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo02g00489 245 PRINTS Major pollen allergen Bet V1 signature 153 172 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Blo02g00489 245 PRINTS Major pollen allergen Bet V1 signature 197 213 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00489 - - - qsu:112028462 190.274
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00489 Blo-Chr2:7307919 Blo11g00668 Blo-Chr11:7341729 1.95E-09 dispersed
Blo17g00585 Blo-Chr17:11331528 Blo02g00489 Blo-Chr2:7307919 1.01E-56 transposed
Blo01g00061 Blo-Chr1:759863 Blo02g00489 Blo-Chr2:7307919 3.52E-48 wgd
Blo02g00489 Blo-Chr2:7307919 Blo07g00161 Blo-Chr7:2089299 9.05E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0740 . Cone7ag0122 Cone4ag0125 . . . . Blo02g00489 . . . . . . . . . . . . . . . . Bhi12g01894 Tan06g2719 Cmetu11g0065 . . . Lcy12g0773 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00489 Blo_Chr02 FPKM 12.047161 13.548662 29.637997 31.652094 7.098365 5.368062 7.385577 35.46516 38.931313 41.102169