Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00514 ATGGATTCTACACGCGACGCCGTCGGAGTTTCAGGAATGGTTCTAATCCCGACGCGTTTCGTGTGGCCATATGGAGGGAGAAATGTTTTTCTCAGTTGCTCTTTCAGGAGGTGGTCTGAACTTATTCCAATGACGCCCGTTGAGGGTTGTCCAACTGTGTTTCAGGCTATTTACAGCTTAGCTCCTGGATACCACCAGTACAAATTTTTTGTCGATGGAGGATGGCGACATGATGAGCACCAGTCGCATATTTCGAGTGAATATGGGATAGTGAACACAGTTCTATTGTCGGCAGAGCCTAATTACATCCCTGCAGTTAGTAATCCCGAGACATCTCCGGGATCGAACATGGATGTGGAGGATAGTGATGCCCCGCACTCTCTTTCAATCCTCATGGCCGGAAAGAGAGGTGAAGGGAAAGAAGGGGTTGGAGAAGAAAGAGTAAGCCGTGAAGAACTCAAAAGGGAGTTAGGAAATTTAGTCGATCGTGATGAATTTCAGACAGAATTGGAAAGTCTACGGGAGGAGCTTTCTCAGGGATTGGGTTCTTTGAAAGCAGACTCTGAGTCGCTTCAATCCTTGAAGGCCGATATGGCAGCAATTATGATGGCTCTGGCGTCGATGCGGACTGAACAAGAAGGATTCCGCCCTGGTAACCCGCGCGACGAAGCTCATGTTGAGAGTCGCTCAGGTCTGCAGAGCAGCGGGCCTCAGGCGAGTGGAGAAGGAGTTCGGTTGGGAGTTGGGTTTTCCTTTCACGCCGAACCTGAAGCGTCGCGGGTGGGTGAGGCTGCTCGGGTTGCTGAAGAGGATTCTCGGGTTGATGAGGAGCTATTGGCTCACGTAGAAAGAAGAAACATGGGCCATGGAATTTGGTTTGACAATGGAAAAAGACATATGGGCGATGAAACTGTGTTGGACAAAAAAACAGCCCATAATAGGGGTACCCAAAGTGGGCTGCCCACTTGGCAAGGCCTAGTGTATCATGAGCAAAATGGCACGGACCGTGTAGTGGATAATGATTCGTTTTTCCGCCATAAGCCGGAGGAGGTCAGAACTACAGATTCTACATTAATTCAGTCATCACCGATGATAGCAGAGGCTGATCTTCAGCGCACACGACATCGAATATCTGTGTTTTTATCTACTCACTCAGCTTATGACTTACTTCCCGAGTCAAGCAAGGTTGTTGCCTTGGATGTCGATTTACCGGTTAAGCAAGCGTTTCATATATTGCATGAGCAGGGAATTTCTTTGGCTCCTCTCTGGGACTTTAGCAAGGGACAGTTTGTCGGAGTTCTCAGTGCAGTGGATTTTATTTTGATATTAAGAGAGCTAGGGAAGTACGGCTCAAATCTGTCAAAGGAAGAGCTTGAGACACACTCAGTATCTGCTTGGAAAGAGGGAAAAGCCTATTTGAGTGGTAGAATTGATGAACACGGGAGACTCTTATCAAGACATTTTATACATGCTAAGCCCGATGATAATTTAAAAGATGTTGCTCTGAAGATTTTGAATAATGAAGTGGCCATAGTTCCCATTATCCATTCATCATCAGAAGATGGTTCTTTTCCACAGCTATTACATCTTGCTTCGCTTTCTGGAATATTAAAATGTATTTGTAGATACTTTAGGAATTGTTCTAGCTCATTGCCTATACTCCAGCTTCCTGTTTGTGCAATTCCAATTGGTACATGGGTTCCCAAAATTGGTGAACAAAATAGACGACCATTAGCAATGCTGAGACCTAATGCTTCTCTAAGTTCAGCTCTAAATTTGTTAATTCAAGCTCAAGTTAGTTCAATACCCATAGTTGATGATAATGACGCGTTGCTGGATACTTACTGTCGAAGTGATATAACTGCGTTGGCTAAAGACAGGGCCTATATGCATACTAATCTTGACGAAATAACAATAAACCAGGTACTTACTGTACTTCTTCATTCCAAAATTTCAACAACTCTTTTTGTGATGACTTTAGTGTTCATCTTCGCGTGTGAACCAGTCATCGGGCGTTGCAATCGGGACAGGACTCATATTCCACTTGTGAACCAAGAAGTCACAGATGCCATATGTGTTTGCGATCCGATTCGTTGCACAAAGTTATGGAGAGACTGGCAAGCCCAGGCTGAAGAAAGAGGCCTTGTGTATTGGGAATATTTATTACATTTGAAAGTTCTTGCCCCTATTCCCATGGCAGCCATTGATGGAGCTCGTGACTTGTAA 2226 44.92 MDSTRDAVGVSGMVLIPTRFVWPYGGRNVFLSCSFRRWSELIPMTPVEGCPTVFQAIYSLAPGYHQYKFFVDGGWRHDEHQSHISSEYGIVNTVLLSAEPNYIPAVSNPETSPGSNMDVEDSDAPHSLSILMAGKRGEGKEGVGEERVSREELKRELGNLVDRDEFQTELESLREELSQGLGSLKADSESLQSLKADMAAIMMALASMRTEQEGFRPGNPRDEAHVESRSGLQSSGPQASGEGVRLGVGFSFHAEPEASRVGEAARVAEEDSRVDEELLAHVERRNMGHGIWFDNGKRHMGDETVLDKKTAHNRGTQSGLPTWQGLVYHEQNGTDRVVDNDSFFRHKPEEVRTTDSTLIQSSPMIAEADLQRTRHRISVFLSTHSAYDLLPESSKVVALDVDLPVKQAFHILHEQGISLAPLWDFSKGQFVGVLSAVDFILILRELGKYGSNLSKEELETHSVSAWKEGKAYLSGRIDEHGRLLSRHFIHAKPDDNLKDVALKILNNEVAIVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPVCAIPIGTWVPKIGEQNRRPLAMLRPNASLSSALNLLIQAQVSSIPIVDDNDALLDTYCRSDITALAKDRAYMHTNLDEITINQVLTVLLHSKISTTLFVMTLVFIFACEPVIGRCNRDRTHIPLVNQEVTDAICVCDPIRCTKLWRDWQAQAEERGLVYWEYLLHLKVLAPIPMAAIDGARDL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8335322 8342239 + BLOR10244 Blo02g00514 56744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00514 741 ProSiteProfiles CBS domain profile. 392 456 IPR000644 -
Blo02g00514 741 ProSiteProfiles CBS domain profile. 573 636 IPR000644 -
Blo02g00514 741 Pfam CBS domain 575 620 IPR000644 -
Blo02g00514 741 Pfam Glycogen recognition site of AMP-activated protein kinase 16 95 IPR032640 -
Blo02g00514 741 Gene3D - 365 548 IPR046342 -
Blo02g00514 741 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 339 645 - -
Blo02g00514 741 SUPERFAMILY E set domains 16 95 IPR014756 -
Blo02g00514 741 SMART cbs_1 577 625 IPR000644 -
Blo02g00514 741 SMART cbs_1 395 444 IPR000644 -
Blo02g00514 741 MobiDBLite consensus disorder prediction 211 242 - -
Blo02g00514 741 SUPERFAMILY CBS-domain pair 570 659 IPR046342 -
Blo02g00514 741 Gene3D Immunoglobulins 13 96 IPR013783 -
Blo02g00514 741 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 9 120 - -
Blo02g00514 741 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 9 120 - -
Blo02g00514 741 SUPERFAMILY CBS-domain pair 372 546 IPR046342 -
Blo02g00514 741 CDD E_set_AMPKbeta_like_N 17 95 - -
Blo02g00514 741 Gene3D - 549 673 IPR046342 -
Blo02g00514 741 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 339 645 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00514 - - - csv:101215603 469.929
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00514 Blo12g00021 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00514 Blo-Chr2:8335322 Blo12g00021 Blo-Chr12:1390914 2.46E-57 dispersed
Blo10g00380 Blo-Chr10:6304936 Blo02g00514 Blo-Chr2:8335322 2.34E-21 dispersed
Blo13g00990 Blo-Chr13:32305339 Blo02g00514 Blo-Chr2:8335322 1.40E-36 transposed
Blo15g00642 Blo-Chr15:17257197 Blo02g00514 Blo-Chr2:8335322 8.12E-15 transposed
Blo17g00379 Blo-Chr17:4204249 Blo02g00514 Blo-Chr2:8335322 2.64E-76 transposed
Blo01g00083 Blo-Chr1:1069161 Blo02g00514 Blo-Chr2:8335322 1.27E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g332 . Blo12g00021 . Bda08g00284 Bpe04g01128 Bpe14g01135 . Bma05g01047 Cmo08g01189 . . . . . . . . . . . . . . . Cla06g00493 Cam06g0530 Cec06g0530 Cco06g0534 Clacu06g0514 Cmu06g0516 Cre06g1287 Cone14ag0773 Cone15ag0779 . . . . Chy11g01484 . Blo02g00514 . . Bda13g00180 Bpe05g00844 . . . Sed09g0226 . . Cma08g01216 . Car08g01087 Car17g00287 Cpe12g00265 Cpe17g00011 Bhi12g02085 Tan06g2644 Cmetu11g2330 . Hepe03g0116 . Lcy13g0190 . . . . . . . Lsi09g01414 . . Cme11g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013863 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00514 Blo_Chr02 FPKM 4.065895 4.973828 2.775212 2.741722 11.550931 10.949016 11.913803 1.005219 1.179421 1.171319