Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00537 ATGCCCTTCCTCTCTCCAAACGCACTCGCCTCTCTGGTCGAATCGGCTTTGTTAACTCACTCTTCTCTTCTCGGCCGTACTGTCCATGGCCAAATCCTGAAGACTCAGCAACATCCACTCCCTTCCTTCCTCTACAATCACCTCGTCAACATGTACTCCAAATTCGACCTCCATAACTCAGCGCAACTCGTCCTCTCGCATGCTTCATCTCGCTCCGTCGTCACATGGACAGCTCTCATCGCTGGCGCCGTCCAAAATGGTCGATTTATCCCCGCTCTACTTCACTTCTCCAACATGCGGCGCGAGAGCATTGAGCCCAATGATTTTACCTTCCCTTGTGCGTTTAAGGCGGCGGCCTCGCTTCGAATGCCAGTGATTGGGAAGCAAGTTCATGCGCTTTCACTTAAAGCTGGACAGATATTCGATGCCTTTGTTGGGTGCAGCGCCTTTGACATGTACAGCAAAACGGGTCTCCAAGATGATGCGTCAAAGATGTTCGATGAAATGCCTGTGAGAAACCTCGCAACATGGAACGCTTGTATTACAAATTCGTGTGGGCAAGTTGGAAGATCAAAGATTGTTTTCGATAGAATTAGTGAGAGGAACGAAGTTTCCTGGAGCTCAGTGGTGGCTGCTTATGTGCAAAACGAGGAGGAAGAGAAGGCGTGTGCCATATTCCTACAGGCTCAAAAAGAACAGAATAAACCAACCGATTTCATAATCTCTAGCATGCTTACTGCTTGTGCTGGCCTGGCGGGGATCGAATTGGGAAGATCAGTCCACGCCCTCTCGGTCAAAGCTTGTGTAGATGGAAACATCTTCGTTGGGAGTGCACTTGTCGACATGTATGGAAAATGTGGAAGTATAGATGATTCCGAAAGGGCCTTCTATGAGATGCCTGAGAGAAACTTGATTTCCTGGAATTCGATGATTGGTGGGTATGCACGACAAGGACATTCAGACAAGGCGTTTGCATTGTTCGAGGAAATGAAATTGAAAAAAGAGGTGCCAAGCTGTGTCACTCTGGTTTGTGTTCTGTCCTCTTGTAGCAGAGCAGGAGCAGTGGAAATGGGCATGGAGATATTCGAGTCAATGAGAGAAAGATATGGTATTGAAGCAGGGGCGGAGCATTATGCTTGTGTGGTTGACTTACTCGGCCGAGCTGGGTTGGTTGATCGTGCTTACGAGTTTATACAGAGAATGCCAATTCGTCCTACGATATCGGTTTGGGGTGCTCTCTTAGGGGCCTGCAGAAAATATGGGGAGCCAGAATTAGGAAAGCTGGCCGCTGAGAACCTCTTTGAACTTGATCCAAAAGACTCAGGCAATCATGTTGTGCTTTCCAATATGTTTGCAGCCGCTGGCAGGTGGGAAGAAGCTACAATGGTAAGAAAGGAGATGAAAGATGTTGGAATCAAGAAGGGAGCTGGATTCAGTTGGATTAATATCCACAACTCAGTTCATGTTTTCCAAGCGAAAGACACTTCCCATGAAAGAAACTCCGAGATTCAGGCAATGCTGGCTGAGTTAAGAAGAGAGATGAAGGAATCAGGCTACAATCCCGACACGAATTTTGCTCTTTTCGACGTGGAAGAAGAAGAGAAAATGTCCGAAGTATGGTGCCACAGCGAGAAAATTGCACTGGCTTTTGGCCTCATTTCCATCCCTCCTGGAGTTCCAATAAGGATCACCAAGAACCTGAGGATTTGCGGAGATTGCCATAGTGCGATCAAGTTCATTTCGGGCATTAGGGGTGGAATCCACGTATCTCCACCATTTGCAGACACCAGAGCTTCGTTCTATATGAACACTAAAATGGCCGCCATGTTTGTGAGTAGAATTTCTCTAGTGAAAATGAGCCAACAACAGCAGCAGAGAGGTGAGAAGCAAGAACCCATCAAATATGGCGACGTCTTTAAGGTCTCCGGTGAGCTTGCGACCAGTTCGATAAGACCGCAAGATGCAAATATAAATGCAAACGGCCGAAACCACGGTGTTGGGAAAGTCAAAGGAGGGCGGTGCGGCATCTCTTATGGCAGTCAGCCGCAGCCCGAAACGAGCGAGCGGGTTTCGTAG 2076 47.93 MPFLSPNALASLVESALLTHSSLLGRTVHGQILKTQQHPLPSFLYNHLVNMYSKFDLHNSAQLVLSHASSRSVVTWTALIAGAVQNGRFIPALLHFSNMRRESIEPNDFTFPCAFKAAASLRMPVIGKQVHALSLKAGQIFDAFVGCSAFDMYSKTGLQDDASKMFDEMPVRNLATWNACITNSCGQVGRSKIVFDRISERNEVSWSSVVAAYVQNEEEEKACAIFLQAQKEQNKPTDFIISSMLTACAGLAGIELGRSVHALSVKACVDGNIFVGSALVDMYGKCGSIDDSERAFYEMPERNLISWNSMIGGYARQGHSDKAFALFEEMKLKKEVPSCVTLVCVLSSCSRAGAVEMGMEIFESMRERYGIEAGAEHYACVVDLLGRAGLVDRAYEFIQRMPIRPTISVWGALLGACRKYGEPELGKLAAENLFELDPKDSGNHVVLSNMFAAAGRWEEATMVRKEMKDVGIKKGAGFSWINIHNSVHVFQAKDTSHERNSEIQAMLAELRREMKESGYNPDTNFALFDVEEEEKMSEVWCHSEKIALAFGLISIPPGVPIRITKNLRICGDCHSAIKFISGIRGGIHVSPPFADTRASFYMNTKMAAMFVSRISLVKMSQQQQQRGEKQEPIKYGDVFKVSGELATSSIRPQDANINANGRNHGVGKVKGGRCGISYGSQPQPETSERVS 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9054391 9056982 + BLOR10267 Blo02g00537 56767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00537 691 Gene3D Tetratricopeptide repeat domain 253 402 IPR011990 GO:0005515
Blo02g00537 691 PANTHER OS07G0578800 PROTEIN-RELATED 3 184 IPR045215 GO:0003723|GO:0009451
Blo02g00537 691 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Blo02g00537 691 MobiDBLite consensus disorder prediction 652 691 - -
Blo02g00537 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Blo02g00537 691 Pfam E motif 420 482 IPR046848 -
Blo02g00537 691 Pfam PPR repeat family 303 350 IPR002885 -
Blo02g00537 691 Pfam PPR repeat family 72 117 IPR002885 -
Blo02g00537 691 Pfam DYW family of nucleic acid deaminases 518 584 IPR032867 GO:0008270
Blo02g00537 691 Coils Coil 493 513 - -
Blo02g00537 691 PANTHER OS11G0583200 PROTEIN 3 184 - -
Blo02g00537 691 PANTHER OS07G0578800 PROTEIN-RELATED 185 585 IPR045215 GO:0003723|GO:0009451
Blo02g00537 691 Gene3D Tetratricopeptide repeat domain 7 125 IPR011990 GO:0005515
Blo02g00537 691 Gene3D Tetratricopeptide repeat domain 128 252 IPR011990 GO:0005515
Blo02g00537 691 Pfam PPR repeat 204 228 IPR002885 -
Blo02g00537 691 Pfam PPR repeat 378 401 IPR002885 -
Blo02g00537 691 PANTHER OS11G0583200 PROTEIN 185 585 - -
Blo02g00537 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00537 - - - jre:109007283 673.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00537 Blo-Chr2:9054391 Blo13g00574 Blo-Chr13:27864490 1.62E-11 dispersed
Blo02g00537 Blo-Chr2:9054391 Blo07g00220 Blo-Chr7:2765618 4.13E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g511 . . . . . Bpe14g01189 . . . . . Cma14g01709 . Car14g01544 . . . Bhi01g00809 . . . . . Lcy11g1547 . . . . . . . . Cone10ag0051 . . . . . Cme06g00608 Blo02g00537 . . Bda13g00119 . . Bma02g00845 . . . Cmo14g01753 . . . . . . . . . . . . . . . . . . . . . Csa03g01327 Chy06g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010596 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00537 Blo_Chr02 FPKM 2.068906 1.67137 5.847858 6.187446 4.718447 4.559246 3.444135 6.741678 6.948915 6.024297