Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00544 ATGGGCGATGATTCGTGCCTCAATGGGATTAACAATGGGAGTTCTGCAGTGAATGGGCAAGGCCATTCACCAAATGGTTACAGAAAAAGCTGCTGGTACGAGGAAGAAATTGAAGAAAATTTGAGATGGTCCTTTGCGCTTAAAAGTATACTTCACACAGGAGCCACTCAGTTCCAAGAAATTGCACTTCTGGACACAAAGCCATTTGGAAAGGCATTAGTCATTGATGGAAAGCTCCAAAGTGCAGAAACAGATGAATTCATCTACCATGAATGCCTTGTTCATCCAGCACTTCTTCATCATCCCATTCCGAAAACTACCTTCATAATGGGAGGAGGTGAAGGTTCTACAGCAAGAGAATTACTTAGACACAGAACTCTGGAGAAGGTCGTCATGTGCGACATTGATGAGGAGGTAGTAGACTTCTGCAAGTCATATTTGACAGTAAACAAAGAAGCTTTCTGTGATCCAAGACTCGAGCTCATTATCAACGACGCCCGAGATGAGCTAGAATGTAGAAGAGAGCGCTACGATGTTATTATCGGAGACCTTGCGGATCCCATCGAGGGAGGCCCATGCTACAAACTCTATACAAAATCTTTCTACGAGTACACTGTCAAACCGAGACTTAACCCGGATGGGATATTCGTCACACAGCAGGCCGGACCAGCTGGGATTTTCAGCCATACTGAAGTATTCTCCTGCATCTACAATACTTTGAGGCAGGTCTTCAAATATGTAGTACCTTATTCAGCTCATATCCCTTCTTATGCTGACATTTGGGGTTGGGTTATGGCCTCAGACGTGCCGTTTGTGCTGAATGCTGACGAGATAGATCTGAGAATTAAACAAAGGATCAAAGGGGAGAACCAGTATCTTGATGGTAAAACGTTTTCTTCGTCCTCTACCTTAAGCAAGGCCGTCAGGCAGTCGTTAAAGAATGAGACTCATGTATATACTGAAGGAACTGCGAGGTTTATATATGGTCATGGCAGCGCCGGCAAGCACGCGCAAGATTGA 1020 44.61 MGDDSCLNGINNGSSAVNGQGHSPNGYRKSCWYEEEIEENLRWSFALKSILHTGATQFQEIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHHPIPKTTFIMGGGEGSTARELLRHRTLEKVVMCDIDEEVVDFCKSYLTVNKEAFCDPRLELIINDARDELECRRERYDVIIGDLADPIEGGPCYKLYTKSFYEYTVKPRLNPDGIFVTQQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSYADIWGWVMASDVPFVLNADEIDLRIKQRIKGENQYLDGKTFSSSSTLSKAVRQSLKNETHVYTEGTARFIYGHGSAGKHAQD 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9361029 9363232 + BLOR10274 Blo02g00544 56774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00544 339 PANTHER SPERMINE SYNTHASE 1 338 - -
Blo02g00544 339 Hamap Polyamine aminopropyltransferase [speE]. 31 313 IPR001045 GO:0003824
Blo02g00544 339 Gene3D Spermidine synthase, tetramerisation domain 30 82 IPR037163 -
Blo02g00544 339 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 338 - -
Blo02g00544 339 Pfam Spermine/spermidine synthase domain 86 262 - -
Blo02g00544 339 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 30 268 IPR030374 -
Blo02g00544 339 Gene3D Vaccinia Virus protein VP39 83 337 IPR029063 -
Blo02g00544 339 Pfam Spermidine synthase tetramerisation domain 32 83 IPR035246 -
Blo02g00544 339 CDD AdoMet_MTases 111 219 - -
Blo02g00544 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 30 312 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00544 K18787 ACL5; thermospermine synthase [EC:2.5.1.79] - rcu:8261463 593.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00544 Blo-Chr2:9361029 Blo18g00262 Blo-Chr18:2786909 2.92E-144 dispersed
Blo02g00544 Blo-Chr2:9361029 Blo01g00399 Blo-Chr1:4520270 1.29E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g479 . . . . . Bpe14g01182 . . . . Cma06g01416 . Car06g01221 . Sed02g1246 Cpe08g00255 . Bhi01g00823 Tan10g0855 Cmetu06g2393 . Hepe05g1540 . Lcy11g1531 . . . . . . . . . . Cone4ag0236 Lsi05g01427 . . Cme06g00617 Blo02g00544 . . Bda13g00130 . . . . . Cmo06g01418 . . . . . . . . . . . . . . Cla05g00553 Cam05g0603 Cec05g0612 Cco05g0610 Clacu05g0599 Cmu05g0569 Cre05g0638 . Csa03g01341 Chy06g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00544 Blo_Chr02 FPKM 46.859436 49.203609 43.695698 45.833557 74.099449 80.718399 73.953346 89.108475 92.008423 80.745201