Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00552 ATGGAGTTTCAGAAGCGCCAAAATCCCAGCCTTCCTGAGAGGAAGGGGCAGAAGAGAAAGCTCGAGGAGGAAATTGAAGAGGAGCAGGAGATCTCTGTGCCATCTGCTGACGCCAGGCAAGCTTTACTGTGTGAGGTGAGTAGTCAGGTCGATGTTCTCAACTCCATCTTTTCTTGGAATGAACCCGATCGAGTTTCTGCTAAGCGTGCCACTCATGTCCTCGCCGAGCTTGCCAAAAATGAGGAGGTGGTGAACGTTATTGTAGAAGGTGGCGCTGTTCCAGCTTTGGTTAAGCATCTGCAAGCCCCGCCGTTCTCTGATGGCGATCGCAGTTCAAAGCCACTGGAGCACGAGGTTGAAAAGGGGAGCGCGTTTGCACTCGGGCTTCTCGCTGTAAAGCCAGAACATCAGCAACTGATAGTTAAAACTGGTGCATTGCCACATCTTGTTAATCTATTAAAGAGGCACAAGGATGGTTCTAGTTCTCGAGCTATTAATAGTGTCATTCGTAGAGCTGCAGATGCCATTACTAACCTTGCTCATGAGAATAGCTCCATTAAATCTCGTGTCAGGATGGAAGGTGGAATTCCTCCGCTTGTTGAGTTGCTTCAATTTACTGATACAAAGGTGCAAAGAGCTGCAGCTGGGGCATTGAGAACCTTGGCGTTTAAGAATGACGAAAATAAGAATCAGATTGTTGAATGCAATGCTCTTCCTACTCTAATTCTAATGCTTTGGTCTGAGGATGCCGCCATACATTATGAAGCGGTTGGCGTGATTGGAAATCTGGTTCATTCATCACCAAATATTAAGAAAGAAGTCCTTGTTGCGGGAGCTCTACAGCCAGTTATTGGACTACTTAGTTCATGCTGCTCTGAAAGCCAAAGGGAAGCAGCCTTGTTACTTGGGCAATTCGCTGCAACTGATTCAGATTGCAAGCCTTTGTTCGATTTTCTTTTTCCCTGTTTATCTTTTTTTTTTTTTTTTCTTGATATAAGGGATGCGCACAATCAAGCGGGTATTGCTCATAATGGAGGTTTGGTGCCACTACTGAAGCTCCTTGATTCTAAAAATGGGTCTCTGCAGCATAATGCAGCATTTGCTCTTTATGGCCTTGCAGATAATGAGGATAACGTATCCGATTTTATTAGGGTGGGTGGTGTTCAGAAGCTTCAGGATGGTGAATTTATTGTTCAAGCAACGAAAGATTGTGTAGCCAAGACATTGAAAAGATTGGAGGAAAAGACACATGGTCGAGTTTTAAATCATCTATTATATCTGATGCGTGTAGCAGAGAAGGCTGTCCAAAGACGAGTTGCTTTGGCTCTTGCCCACCTTTGTTCACCAGACGATCAGAGAACTATATTCATTGATAATAATGGCATGTTGTTTTCTCCACGGATGGAGTTACTTCTCGGGCTTCTTGGTTCTACAAGCCTTAAGCAGGAACTTGATGGTGCTGTGGCTCTTTACAAGCTTGCAAACAAAGCGATGACTCTTTCTCCAGTGGATGCTGCTCCCCCATCTCCGACACCACAGGTTTACTTGGGGGAACAGTACGTAAATAACCCTACACTGTCTGATGTGACATTTCTCGTTGAAGGCAAACGGTTCTATGCCCACAGAATTTGTCTGCTTGCTTCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGCTACCGGGAAAAGGATGCAAGGGACATAGAAATCCCAAATATTAGGTGGGAGGTTTTTGAATTGATGATGAGATTCATATATACCGGATCTGTGGGCGTTTCGATATATATTGCGCAAGATCTACTCCGAGCGGCTGATCAGTATCTCTTGGAGGGATTAAAAAGACTTTGTGAGTATACCATTGCACAGGATATATCATTGGAAAATGTTGCAAGCATGTATGAACTTTCAGAAGCATTCCATGCTATATCGTTGAGGCACACATGCATCCTCTATATTTTGGAACAGTTTGAGAAACTGAGTGCTAAGCCAGGACTGCTTGGGAGCGGGCAACCTGCCGTCGTACAAAGTAGTAAACTTTCTCTGCTCGAAGGTGACGCTTGTCATTCTCTCTCTCGCTCTCTAGCACCCATTTTCTTGCAGGCTACTCTCTCGGTGCCCGGAGAGTGCTCAGTAGCAGAGGTTTTCTTCTCGATGGATTCTGCGATCACGGGTTTGCAAAGAAAGCCGTTTTCAATCAAACTGTGGCCACCCAGCCAAAACACGAGGTTAATGCTTGTAGAGCGGATGACAAACAATATGACTTCAAAATCGTTTTTCACCCAGAAGTATGGCATTCTTGGCAAGGAAGAGGCTGAGGAGGAATCTAAAAGGATTGAGGACATAGCTTTTGTTGCTGCAAATGAAAATTATCAAAAGCTTCCCGATGGCGATGGAGGTTCTGCAGTGCAGCTTTATGCGAAGGAATGTAGCAAACTTCTTCTTGAAGCTTTGAAAAGAGGCCCTCAAAGCAAAGTAAACCGAGACTTGACAATATCTAATGATATCGCTTCAACTTTTGAAACCTGTTTTGATATTTCAAAGGGCCATCGAGCATTTATCGAGTTGGAAGAGGCTGAAGAATTGCTAAAGCCATTGAAAGAGCCTGGGAATTCATATACAAAAATATGTCTCAGCAACAGAAGCTTTGGCTTAGGAGCAGCTCAGGTTGCAGAGCCGATTTTGGTCTCTATTAAGGATCAGTTAAAAGAGGTCGATATATCGGATTTTATTGCAGGTAGACCTGAGGCAGAGGCTCTAGAAGTCATGAAGATATTTGCCACTGCCTTACAAGGCAGTATTTTGAGGTCCCTCAACCTCTCGAACAATGCATTGGGTGAGAAGGGTGTTAGAGCATTCGGGGCACTGCTGAAATCGCAAAACTGTTTAGAAGAACTCTATTTGATGAATGGCGGAATCTCTGAAGAAGCTGCAAAAGCAGTGGCTGAGCTGATTCCCTTGACGGAGAAACTTAAAATACTTCATTTCCATAATAACATGACTGGAGATGGCGGAGGGATTGCTATTTCTGAAGTTGTAAAGCAATCTCCTTTATTGGAGGATTTTCGCTGCTCTTCCACAAGGATAGGCTCCAATGGCGGGATAGCATTGTCTATCGCACTTGGAACATTCACCGGTTTGAGGAAGCTCGATCTGAGAGACAACATGTTCGATACCGAAAGTGGAGTTGCTCTTAGTAGAGCTCTTTCGAAACATGCAGGTTTGAAGGAGGTCTATTTGAGCTACTTGAACTTAGGAGATGAAGGCGCTATTTCCATAGCCAACGCTCTAAAGGAAACTGCTCTTTCACTTGAAGTCTTGGAAATGGCTGGAAATGATATAACAGCAAATGCCGCTTCTGATATAGCTGCTTGCATATCAAAAAAGCAGCATCTTGCCAAATTGAACTTGTCCGAGAATGAGCTTAAGGATGAAGGGGTGATATTGATCAGCAAGGCTCTAGAAGATCACACCCATTTGAAAGAAGTTGATATGAGCACCAACTCGATGGGGAGGGCCGGAGCCCGGGTTTTGGCTCAAATTGTGGTTCAGAAACCGAAATTCGTGCTGCTCAACGTTAATGGGAATTACATCTCCGAAGAAGGCATCGATGAGCTGAAGGATATCTTCAAGAAATCTCCAGTTATGCTTGGTTCTCTGGATGAGAATGACCCTGAAGGAAGGGATGATGAGGGTGGAGAATCTGCCACAGGCGGAGATGACGAGGATGAACTGGAAACTAAGTTGAAGAACCTTGAAGTGACAGAGGAGGATTAA 3774 44.41 MEFQKRQNPSLPERKGQKRKLEEEIEEEQEISVPSADARQALLCEVSSQVDVLNSIFSWNEPDRVSAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPPFSDGDRSSKPLEHEVEKGSAFALGLLAVKPEHQQLIVKTGALPHLVNLLKRHKDGSSSRAINSVIRRAADAITNLAHENSSIKSRVRMEGGIPPLVELLQFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLWSEDAAIHYEAVGVIGNLVHSSPNIKKEVLVAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKPLFDFLFPCLSFFFFFLDIRDAHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKTHGRVLNHLLYLMRVAEKAVQRRVALALAHLCSPDDQRTIFIDNNGMLFSPRMELLLGLLGSTSLKQELDGAVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVGVSIYIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVASMYELSEAFHAISLRHTCILYILEQFEKLSAKPGLLGSGQPAVVQSSKLSLLEGDACHSLSRSLAPIFLQATLSVPGECSVAEVFFSMDSAITGLQRKPFSIKLWPPSQNTRLMLVERMTNNMTSKSFFTQKYGILGKEEAEEESKRIEDIAFVAANENYQKLPDGDGGSAVQLYAKECSKLLLEALKRGPQSKVNRDLTISNDIASTFETCFDISKGHRAFIELEEAEELLKPLKEPGNSYTKICLSNRSFGLGAAQVAEPILVSIKDQLKEVDISDFIAGRPEAEALEVMKIFATALQGSILRSLNLSNNALGEKGVRAFGALLKSQNCLEELYLMNGGISEEAAKAVAELIPLTEKLKILHFHNNMTGDGGGIAISEVVKQSPLLEDFRCSSTRIGSNGGIALSIALGTFTGLRKLDLRDNMFDTESGVALSRALSKHAGLKEVYLSYLNLGDEGAISIANALKETALSLEVLEMAGNDITANAASDIAACISKKQHLAKLNLSENELKDEGVILISKALEDHTHLKEVDMSTNSMGRAGARVLAQIVVQKPKFVLLNVNGNYISEEGIDELKDIFKKSPVMLGSLDENDPEGRDDEGGESATGGDDEDELETKLKNLEVTEED 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9721536 9731505 + BLOR10282 Blo02g00552 56782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00552 1257 Gene3D Ribonuclease Inhibitor 1128 1232 IPR032675 -
Blo02g00552 1257 SUPERFAMILY ARM repeat 49 392 IPR016024 -
Blo02g00552 1257 Gene3D - 38 324 IPR011989 -
Blo02g00552 1257 Gene3D WPP domain 731 828 IPR038214 -
Blo02g00552 1257 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 664 IPR044282 -
Blo02g00552 1257 MobiDBLite consensus disorder prediction 1223 1240 - -
Blo02g00552 1257 Gene3D - 329 503 IPR011989 -
Blo02g00552 1257 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 91 145 IPR000225 GO:0005515
Blo02g00552 1257 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 229 IPR000225 GO:0005515
Blo02g00552 1257 Coils Coil 11 31 - -
Blo02g00552 1257 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 194 IPR000225 GO:0005515
Blo02g00552 1257 Gene3D Potassium Channel Kv1.1; Chain A 508 653 IPR011333 -
Blo02g00552 1257 Gene3D Ribonuclease Inhibitor 847 1127 IPR032675 -
Blo02g00552 1257 MobiDBLite consensus disorder prediction 1 26 - -
Blo02g00552 1257 Pfam Leucine Rich repeat 1074 1093 IPR001611 GO:0005515
Blo02g00552 1257 Pfam Leucine Rich repeat 1128 1149 IPR001611 GO:0005515
Blo02g00552 1257 Pfam Leucine Rich repeat 934 952 IPR001611 GO:0005515
Blo02g00552 1257 SMART arm_5 183 223 IPR000225 GO:0005515
Blo02g00552 1257 SMART arm_5 267 307 IPR000225 GO:0005515
Blo02g00552 1257 SMART arm_5 225 265 IPR000225 GO:0005515
Blo02g00552 1257 SMART arm_5 334 374 IPR000225 GO:0005515
Blo02g00552 1257 SMART arm_5 133 181 IPR000225 GO:0005515
Blo02g00552 1257 SMART arm_5 80 132 IPR000225 GO:0005515
Blo02g00552 1257 MobiDBLite consensus disorder prediction 1 32 - -
Blo02g00552 1257 MobiDBLite consensus disorder prediction 1216 1257 - -
Blo02g00552 1257 SUPERFAMILY POZ domain 518 621 IPR011333 -
Blo02g00552 1257 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515
Blo02g00552 1257 Pfam Armadillo/beta-catenin-like repeat 187 222 IPR000225 GO:0005515
Blo02g00552 1257 Pfam BTB/POZ domain 520 622 IPR000210 GO:0005515
Blo02g00552 1257 Pfam WPP domain 731 825 IPR025265 -
Blo02g00552 1257 SMART LRR_RI_2 1100 1127 - -
Blo02g00552 1257 SMART LRR_RI_2 931 958 - -
Blo02g00552 1257 SMART LRR_RI_2 1156 1183 - -
Blo02g00552 1257 SMART LRR_RI_2 1128 1155 - -
Blo02g00552 1257 SMART LRR_RI_2 987 1014 - -
Blo02g00552 1257 SMART LRR_RI_2 959 986 - -
Blo02g00552 1257 SMART LRR_RI_2 1071 1098 - -
Blo02g00552 1257 SMART LRR_RI_2 1043 1070 - -
Blo02g00552 1257 SMART LRR_RI_2 1184 1211 - -
Blo02g00552 1257 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515
Blo02g00552 1257 SMART BTB_4 527 624 IPR000210 GO:0005515
Blo02g00552 1257 MobiDBLite consensus disorder prediction 1241 1257 - -
Blo02g00552 1257 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 387 IPR000225 GO:0005515
Blo02g00552 1257 CDD BTB_POZ_ARIA_plant 514 629 - -
Blo02g00552 1257 SUPERFAMILY RNI-like 852 1226 - -
Blo02g00552 1257 ProSiteProfiles BTB domain profile. 527 594 IPR000210 GO:0005515
Blo02g00552 1257 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 664 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00552 - - - jre:109010456 1095.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00552 Blo-Chr2:9721536 Blo06g00454 Blo-Chr6:25664039 0 dispersed
Blo03g00533 Blo-Chr3:20121361 Blo02g00552 Blo-Chr2:9721536 3.51E-07 dispersed
Blo12g00569 Blo-Chr12:23897756 Blo02g00552 Blo-Chr2:9721536 4.47E-07 dispersed
Blo12g00653 Blo-Chr12:24867798 Blo02g00552 Blo-Chr2:9721536 8.08E-12 dispersed
Blo02g00552 Blo-Chr2:9721536 Blo05g00361 Blo-Chr5:4361484 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12030 PF00651 BTB 2.50E-24 CL0033 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00552 Blo_Chr02 FPKM 29.682281 29.6271 41.126152 39.190544 53.529869 51.905846 55.4557 20.502636 20.200521 21.492752