Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00553 ATGGCTCAGCTGGACAGCCAGCAACCCTCCCTCCACCATGTCCGCCGAGCCAAGTCTTTGATTTCTGCCCTCAACCTCGTCTCCCGCAATCTTCCTCTGCCTCCTCAACTTTTTGACACCGTTTCCTCCATCTATTCTGGTGCTCCAGACGCAAACAACGACCCCTGCGATGATTTGGATACTCATCAAAGTGACACTCAAGAAGATTTATTGAGTGAAATTGAGGATGCATTAACCAGTCAGCAATCAGAATGCACGTCAAGTTTTGGATTGACAGAATCAAGAGCAAATCGGTATCAGAGCAACATACACCATCGGCTGACTGAACTTGAAGAATTACCATCCAATAGAGGAGAGAACTTGCAGACAAAGTGCTTGATTGAGCTTTATGGCTTAAAGCTGGGAGAATTGCAAAGAAAAGTTCGATCTGATTTGAGCTTGGAGTACTTGCTACATAAGACTTGTGCATATCCCGATAAGCAATTATTTGATTGGGGGATGATGCGGTTGCATCGTCTTCCATATGGTGTAGGAGATTCTTTTGCCACTGAAGCTGATGATCAGTTAAGGAAGAAACGGGATGCGGAGAGACTGTCACGGTTAAAAGAGGAGGAGAAGAACCACGTCGAGACTAGGAAAAGAAAATTTTTTACAGAAATACTCAATGCTGTTCGTGAGTTCCAGTTGCAAAATCAAGCTACTTTGAAACGCCGAAAACAAAGGAATGATGGAATCCAGGCTTGGCATGGAAGGCAAAGACAGCGAGCAACCCGAGCAGAGAAATTGAGGTTCCAAGCACTAAAGGCAGATGACCAAGAAGCGTACATGAGATTGGTTAAGGAGAGCAAGAATGAACGATTAACAATTCTTCTTGAAGAAACTAATAAGTTACTGGTTAATTTGGGTGCTGCTGTTCAACGTCAAAAGGATTCTAAACTTTCAGATGGCATTGAAACCTTGGATGACTCAGAAACTGATTTGTCTGAGTTGGATACTTCAAAGAATGGAACCCCTCCAGATTTTCTTCCTGAGGAAGATGTGGATGCCAATGATTCAGATCACAATGATGACGCAGATGATCTACTTGAAGGTCAGAGGCAGTATAACTCTGCTATTCATGCTATCCAAGAAAAGGTCACTGAGCAACCATCCACATTGCAAGGAGGAGAATTAAGATCCTACCAAATAGAGGGGCTGCAATGGATGCTTTCTTTATTTAACAACAACTTAAATGGAATTTTGGCTGATGAGATGGGATTGGGAAAGACAATCCAAACCATTTCATTGATTGCTTATCTGATGGAATTCAAGGATGTTACCGGGCCCCACTTGATAGTAGCTCCAAAGGCTGTGCTGCCAAATTGGATGATTGAATTCTCAACATGGGCCCCTAGTGTTGCAGCTGTTCTTTACGATGGGCGTCAAGAGGAAAGAAAGGCAATAAAAGAAGAATTACTTGGAGATAGGAAATTTAATGTGTTGGTTACACATTATGATCTAATCATGAGAGATAAATCATTTTTGAAGAAAATCCACTGGTACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCGAGAATGTGCTCTATCACAAACACTTTCAGGTTATCAAATAAAGCGCAGGCTTCTATTGACTGGTACCCCCATACAGAACAGTTTGCAGGAACTATGGTCCCTACTTAATTTTCTTCTTCCGCATATTTTTAATTCCGTTCAGAATTTCCAGGAATGGTTTAATGCCCCCTTTGTTGGTCGGGGGGATGTGTCTCTGACAGATGAAGAAGAGCTATTAATCATCCGACGTTTGCATCACGTTATTAGGCCATTTATATTGAGGCGGAAAAAAGATGAAGTGGAGAAATATCTTCCAGGGAAGTCACAGGTCATTCTAAAATGTGATATGTCAGCATGGCAGAAAGTATATTATCAGCAAGTTACAGATGATGGCAGAGTTGATACTGGCTCTGGGAAGTCAAAGACTCTGCAGAATCTAACAATGCAGCTTAGAAAGTGTTGTAACCACCCATATCTTTTCATAACTGGAGATTATAACATCTGGCGAAAGGAAGAAATCATCAGAGCATCTGGGAAATTTGAACTGCTTGATCGTTTACTCCCGAAGCTACGGAGAGCTGGACACAGAGTTTTGCTTTTCTCTCAAATGACACGACTGATGGACATTCTTGAGATATATCTTCAGCTACATGATTTCAAATATCTTAGACTGGATGGTTCGACAAAAACTGAGGAAAGAGGTTCTCTACTGAAGCAATTCAATGCTCCCGACTCTCCTTTCTTCATGTTTCTCCTGAGTACTCGTGCTGGGGGGCTTGGTTTGAACTTACAGACAGCAGATACTGTTATAATTTTCGACAGTGATTGGAATCCTCAAATGGACCAACAAGCAGAGGATCGTGCCCATCGAATAGGACAAAAGAAAGAAGTTAGGGTGTTTGTCTTGGTCAGTGTCGGGTCAATTGAGGAGGTAATATTGGAACGTGCTAAAGAAAAGATGGGCATTGACGCCAAGGTCATCCAGGCCGGACTTTTCAATACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATCATGCGTCGAGGAACAAGCTCGCTCGGAACAGACGTGCCTAGCGAGAGAGAAATTAACCGCCTGGCAGCAAGGTCAGATGAGGAATTTTGGCTTTTCGAGAAGATGGACGAGGAGAGAAGACATAAAGAGAATTATCGATCCCGGCTTATGGAGGAACACGAGGTGCCGGAGTGGGTATACTCTGCACCTGATAAAAAGGAAGAAAAGAACAGAGGTTTCGACAACATTACTGGAAAACGACGAAGAAAGGAGGTGGTTTATGCAGATTCACTCAGTGACTTGCAGTGGATGAGGGCAGTAGAAAATGGAGAAGATATATACAATCTTTCTGTGAAAGGGAGGAGAAGAGATCTGACAGCTGATGGCACAACAGCAATTATCAGCAACTCGAGGGTCGAAATTAAAGAAATAGAATTGCAAGAAACTGCGACAATGGTTGTTAGTGAAGGCACAAGTGAGGACACCACCGGAGTAGAATCAACCCCGAAGAGGCACAAGTTTGAAGAGGCAATGATTGGAATACATGAATATGATTCAGCCTCGAGAAACGAGTGGCATAGCCAAATGTTCACATGGAATACTCAGAAGAAAAAGAGATCTAGCTATGTAAATCAAGGCTCATCTACTGATTCTAGAGGACATAATTCGTATGGAAGAGGAAATGGGTGGTCTTGA 3279 42.6 MAQLDSQQPSLHHVRRAKSLISALNLVSRNLPLPPQLFDTVSSIYSGAPDANNDPCDDLDTHQSDTQEDLLSEIEDALTSQQSECTSSFGLTESRANRYQSNIHHRLTELEELPSNRGENLQTKCLIELYGLKLGELQRKVRSDLSLEYLLHKTCAYPDKQLFDWGMMRLHRLPYGVGDSFATEADDQLRKKRDAERLSRLKEEEKNHVETRKRKFFTEILNAVREFQLQNQATLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTILLEETNKLLVNLGAAVQRQKDSKLSDGIETLDDSETDLSELDTSKNGTPPDFLPEEDVDANDSDHNDDADDLLEGQRQYNSAIHAIQEKVTEQPSTLQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEFKDVTGPHLIVAPKAVLPNWMIEFSTWAPSVAAVLYDGRQEERKAIKEELLGDRKFNVLVTHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRECALSQTLSGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFVGRGDVSLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDDGRVDTGSGKSKTLQNLTMQLRKCCNHPYLFITGDYNIWRKEEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLQLHDFKYLRLDGSTKTEERGSLLKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKEKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRHKENYRSRLMEEHEVPEWVYSAPDKKEEKNRGFDNITGKRRRKEVVYADSLSDLQWMRAVENGEDIYNLSVKGRRRDLTADGTTAIISNSRVEIKEIELQETATMVVSEGTSEDTTGVESTPKRHKFEEAMIGIHEYDSASRNEWHSQMFTWNTQKKKRSSYVNQGSSTDSRGHNSYGRGNGWS 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9732994 9739437 - BLOR10283 Blo02g00553 56783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00553 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 615 IPR027417 -
Blo02g00553 1092 PANTHER SNF2/RAD54 HELICASE FAMILY 11 1045 - -
Blo02g00553 1092 Gene3D - 625 843 IPR027417 -
Blo02g00553 1092 SMART SnAC_2 905 965 IPR029295 GO:0042393
Blo02g00553 1092 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 568 IPR014001 -
Blo02g00553 1092 SMART helicmild6 728 812 IPR001650 -
Blo02g00553 1092 SMART ultradead3 387 579 IPR014001 -
Blo02g00553 1092 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 702 869 IPR001650 -
Blo02g00553 1092 CDD SF2_C_SNF 690 823 - -
Blo02g00553 1092 MobiDBLite consensus disorder prediction 344 358 - -
Blo02g00553 1092 Gene3D - 382 624 IPR038718 -
Blo02g00553 1092 MobiDBLite consensus disorder prediction 310 360 - -
Blo02g00553 1092 Pfam Snf2-ATP coupling, chromatin remodelling complex 906 965 IPR029295 GO:0042393
Blo02g00553 1092 Pfam Helicase conserved C-terminal domain 699 812 IPR001650 -
Blo02g00553 1092 PANTHER ATP-DEPENDENT HELICASE BRM 11 1045 - -
Blo02g00553 1092 MobiDBLite consensus disorder prediction 1064 1092 - -
Blo02g00553 1092 Pfam SNF2-related domain 394 679 IPR000330 GO:0005524|GO:0140658
Blo02g00553 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 866 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00553 - - - csv:101222943 1706.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00085 Blo-Chr1:1144467 Blo02g00553 Blo-Chr2:9732994 1.51E-160 dispersed
Blo02g00363 Blo-Chr2:3997037 Blo02g00553 Blo-Chr2:9732994 2.71E-160 dispersed
Blo02g00553 Blo-Chr2:9732994 Blo02g00574 Blo-Chr2:10572496 1.31E-171 dispersed
Blo11g00866 Blo-Chr11:16409538 Blo02g00553 Blo-Chr2:9732994 5.34E-82 dispersed
Blo17g00493 Blo-Chr17:7258656 Blo02g00553 Blo-Chr2:9732994 1.01E-71 dispersed
Blo02g00553 Blo-Chr2:9732994 Blo14g00290 Blo-Chr14:2904818 1.62E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g371 . . . . . Bpe14g01153 . . . . Cma06g01457 Cma14g01649 Car06g01259 Car14g01483 Sed02g1676 Cpe08g00220 Cpe03g01393 Bhi01g00925 Tan10g0941 Cmetu06g0809 . Hepe05g1489 . Lcy11g1461 . . . . . . . Cone14ag0789 Cone15ag0790 . . Lsi05g01493 . . Cme06g00682 Blo02g00553 . . . . . Bma02g00714 . . Cmo06g01459 Cmo14g01693 . . . . . . . . . . . . . Cla05g00609 Cam05g0669 Cec05g0679 Cco05g0673 Clacu05g0664 Cmu05g0632 Cre05g0702 . Csa03g01407 Chy06g00650 .
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12031 PF00176 SNF2_N 5.30E-68 CL0023 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00553 Blo_Chr02 FPKM 36.626232 38.190929 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0