Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00573 ATGAATCTTCTGTTGCAGGAGCTCAAACAACTGGCTGATGAACTACGTTCTGATGTCATCTTTAATGTTTCTAAAACCGGGGGTCACTTGGGCTCGAGCCTTGGAGTTGTTGAGCTCACTGTTGCTCTTCACTATGTCTTCAATGCTCCTAAGGATAAGATTCTTTGGGACGTTGGCCATCAGTCTTATCCACACAAAATCCTGACTGGTAGAAGAGACAAGATGTCTACGATTCGTCAGACAAATGGCTTATCGGGATTTACCAAGCGGTCCGAGAGTGAATTCGATTGCTTTGGGACTGGACACAGCTCTACTACCATATCCGCAGGCTTGGGGATGGCGGTGGGGAGGGATTTGAAGGGAAGAAAGAACAACGTAATTGCCGTTATTGGTGATGGTGCAATGACGGCTGGGCAAGCTTACGAAGCCATGAACAACGCCGGATACCTGGACTCCGATATGATCGTCATTCTTAATGATAATAAACAAGTATCATTACCTACTGCTACTCTGGACGGGCCTGTAGCTCCTGTCGGAGCTTTGAGCAGTGCTCTCAGTAGATTGCAGTCAAACAGGCCTCTTAGGGAACTAAGAGAGGTTGCAAAGGGTGTTACAAAAAAAATTGGTGGTCCTATGCATGAACTGGCTGCGAAAGTTGATGAATATGCTCGTGGGATGATCAGCGGTTCTGGATCGACGCTTTTTGAAGAGCTTGGACTTTATTATATTGGTCCTGTCGATGGCCATAACATTGATGATCTTGTTTCCATTCTGAAAGAGGTCAAGAGCACCCAAACGACGGGTCCTGTGCTTATACATGTAGTCACTGAGAAAGGCCGTGGATACCCATATGCAGAGAAAGCCGATGATAAGTACCATGGAGTGACGAAATTTGATCCCGCAACTGGAAAGCAGTTCAAATCCAAGGCCACCACCCAGTCTTTCACTACATATTTTGCAGAAGCTTTGATAGCAGAGGCAGAAGTTGACAAAGATATTGTTGCAATTCATGCTGCAATGGGAGGTGGAACGGGCTTAAACCTCTTCCTTCGCCGATTTCCAACGAGATGCTTTGATGTCGGAATAGCTGAACAACATGCTGTTACTTTTGCTGCTGGTCTGGCTTGTGAAGGGATTAAACCTTTCTGTGCGATTTACTCATCTTTCATGCAAAGGGCTTATGATCAGGCAAGCTTCCGTCTCCCTGTAGTTCATGATGTAGATTTGCAAAAGCTGCCAGTGAGATTCGCGATGGATAGAGCTGGACTAGTCGGAGCAGATGGTCCAACTCATAGCGGATCATTTGATGTCACTTTCATGGCTTGCCTCCCTAACATGGTGGTGATGGCCCCTTCCGACGAAGCCGAACTCTTCCATATGGTTGCTACTGCTGCTGCCATAGAAGACCGGCCCAGTTGCTTCAGGTACCCTAGAGGAAATGGTATTGGGGTGGTTCTACCACCAGGAAATAAAGGCATTCCTATTGAGGTGGGGAGAGGAAGAATATTGATCGAAGGAGAAAGAGTGGCACTCTTGGGCTATGGTACAGCCGTACAAAGCTGTTTGGCTGCTTCTTCGGTGGTGGAAAACCACGGCTTGCAAATAACAGTTGCGGATGCACGCTTTTGCAAACCGCTCGATCAGGCCCTTATCCGAAGTCTGGCGAAATCTCACGATGTTTTAATCACTGTTGAAGAAGGATCAATTGGCGGGTTTGGATCTCACGTGGCACAGTTCCTGGCCCTGGATGGCCTTCTCGATGGCAAATTAAAGTGGAGACCACTGGTTCTTCCTGATCGATATATTGACCATGGATCACCGGACGACCAAATGGCGGAAGCTGGTCTAACGCCAGCTCATATTGCAGCGACGGTATTCAATATACTGGGACAGAATAGGGAGGCATTGAAGATCATGTCATGA 1923 47.32 MNLLLQELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPKDKILWDVGHQSYPHKILTGRRDKMSTIRQTNGLSGFTKRSESEFDCFGTGHSSTTISAGLGMAVGRDLKGRKNNVIAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVAPVGALSSALSRLQSNRPLRELREVAKGVTKKIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVSILKEVKSTQTTGPVLIHVVTEKGRGYPYAEKADDKYHGVTKFDPATGKQFKSKATTQSFTTYFAEALIAEAEVDKDIVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGIKPFCAIYSSFMQRAYDQASFRLPVVHDVDLQKLPVRFAMDRAGLVGADGPTHSGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIEDRPSCFRYPRGNGIGVVLPPGNKGIPIEVGRGRILIEGERVALLGYGTAVQSCLAASSVVENHGLQITVADARFCKPLDQALIRSLAKSHDVLITVEEGSIGGFGSHVAQFLALDGLLDGKLKWRPLVLPDRYIDHGSPDDQMAEAGLTPAHIAATVFNILGQNREALKIMS 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10568613 10571562 + BLOR10303 Blo02g00573 56803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00573 640 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 2 636 IPR005477 GO:0008661|GO:0016114
Blo02g00573 640 CDD TPP_DXS 27 282 IPR005477 GO:0008661|GO:0016114
Blo02g00573 640 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 311 507 IPR029061 -
Blo02g00573 640 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 6 375 IPR029061 -
Blo02g00573 640 Gene3D - 313 485 - -
Blo02g00573 640 Gene3D - 498 629 IPR009014 GO:0003824
Blo02g00573 640 SMART Transket_pyr_3 313 484 IPR005475 -
Blo02g00573 640 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 5 629 IPR005477 GO:0008661|GO:0016114
Blo02g00573 640 SUPERFAMILY TK C-terminal domain-like 493 629 IPR009014 GO:0003824
Blo02g00573 640 Pfam Transketolase, C-terminal domain 498 621 IPR033248 -
Blo02g00573 640 ProSitePatterns Transketolase signature 2. 425 441 IPR020826 -
Blo02g00573 640 Pfam Transketolase, pyrimidine binding domain 314 480 IPR005475 -
Blo02g00573 640 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 3 276 IPR005477 GO:0008661|GO:0016114
Blo02g00573 640 Gene3D - 1 285 - -
Blo02g00573 640 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 1 630 IPR005477 GO:0008661|GO:0016114
Blo02g00573 640 PANTHER BNAA01G35430D PROTEIN 2 636 - -
Blo02g00573 640 CDD TPP_PYR_DXS_TK_like 319 478 - -
Blo02g00573 640 ProSitePatterns Transketolase signature 1. 16 35 IPR005474 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00573 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - jre:109005936 1182.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00573 Blo-Chr2:10568613 Blo04g01122 Blo-Chr4:18044794 0 dispersed
Blo02g00573 Blo-Chr2:10568613 Blo01g00162 Blo-Chr1:2174932 2.86E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00573 Blo_Chr02 FPKM 13.677159 18.174101 325.638306 325.724243 7.707649 8.639997 7.299736 503.953522 506.494476 498.249603