Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00577 ATGTTTAAATCAGGCAACCCGCAGTGTGATCTCAAATCTGAAATCAGTTTCACTTCCAGTGAATGGGAAAAGCTTTTCAAATCTCAGAGTGCATGTTCCACGGGGACGCTTGCAGATTTGCTGTGCGGTAATTTTTTTACTTCTTTTATGGTACAAGGACTTGAGGCAAAACCCGAGACAGTGTTCAAAGTATGTGACATAGTGAGGAAGCAGCTAGCTTTACCTGATGATTCTGCTGTCTCTGGGGAGTCAAAGTTTGCCTCACTTGGAGCTGACTCTCTCGATACGGTTGAGATTGTGATGGGCCTTGAAGAAGAATTCGGAATCAGCGTGGAGGAAGAAAGTGCCCAGAGCATTGCTACAGTCCAGGATGCAGCGGACCTGATTGAGATGCTGATTGAGAAGAAGGGTGCTTAA 417 45.56 MFKSGNPQCDLKSEISFTSSEWEKLFKSQSACSTGTLADLLCGNFFTSFMVQGLEAKPETVFKVCDIVRKQLALPDDSAVSGESKFASLGADSLDTVEIVMGLEEEFGISVEEESAQSIATVQDAADLIEMLIEKKGA 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10603424 10608005 - BLOR10307 Blo02g00577 56807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00577 138 PANTHER ACYL CARRIER PROTEIN 43 137 IPR044813 GO:0000036|GO:0006633
Blo02g00577 138 Hamap Acyl carrier protein [acpP]. 59 133 IPR003231 GO:0006633
Blo02g00577 138 TIGRFAM acyl_carrier: acyl carrier protein 60 130 IPR003231 GO:0006633
Blo02g00577 138 Pfam Phosphopantetheine attachment site 63 129 IPR009081 -
Blo02g00577 138 ProSiteProfiles Carrier protein (CP) domain profile. 58 133 IPR009081 -
Blo02g00577 138 SUPERFAMILY ACP-like 59 133 IPR036736 -
Blo02g00577 138 SMART Phosphopantetheine attachment site 61 115 IPR020806 GO:0031177
Blo02g00577 138 ProSitePatterns Phosphopantetheine attachment site. 88 103 IPR006162 -
Blo02g00577 138 Gene3D - 56 137 IPR036736 -
Blo02g00577 138 PANTHER ACYL CARRIER PROTEIN 2, CHLOROPLASTIC-RELATED 43 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00577 - - - qsu:111987702 143.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00577 Blo07g00190 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00577 Blo-Chr2:10603424 Blo11g00477 Blo-Chr11:4342471 8.30E-46 dispersed
Blo02g00577 Blo-Chr2:10603424 Blo07g00190 Blo-Chr7:2373907 8.76E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g369 . . . . . Bpe14g01151 . . . Cmo17g00295 . . . . . . . . . . . . . . Cla06g00507 Cam06g0547 Cec06g0547 Cco06g0555 Clacu06g0533 Cmu06g0532 Cre06g1301 Cone14ag0788 Cone15ag0789 Cone7ag0182 Cone4ag0177 . . Chy11g01467 . Blo02g00577 Blo07g00190 Bda11g00543 . . Bpe13g00646 . Bma06g01520 . . . Cma08g01200 Cma17g00305 Car08g01078 Car17g00281 Cpe12g00257 Cpe17g00097 Bhi12g01745 . . . . . . . . . . . . . Lsi09g01393 . . Cme11g01973
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002416 3 2 4 1 2 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 1 1 2 2 2 1 1 1 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00577 Blo_Chr02 FPKM 11.074627 11.294868 0.152897 0.144677 0.0 0.0 0.0 0.0 0.0 0.0