Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00598 ATGGCAATGGAGCTTGTTCCAATAGGAACCATATTGGTTGTGCTAACAAAACAGGTCATCAAAACGGCTACTGCGGCAAAAGACATTCTCATCGAGAAAGAGAGTTTTAAAGCCCTCTCAAAGCATTTGTTCGACATCGAATCAGTCCTAAAGGAGTTGCAGCTTCAAGAGCTAAACGATTCTCAAGCAGGAAGACACGCTTTGGAATCTCTCGGATCAGAGGTTAAACGAGCAAATAACTTGGTCGAAAAGTATCGAAACAGAAGCCGTTTTTATCTACTCGTCCAGTGTCGTCACATTGTCAACGAGGTCCAACAAGTCACCAGGAAAATCGGAGAGTCTTTGGCTGCCTTATCTCTGGCCAACACTGAGGTTCTCCCGAGGATTTCCGACCAAGTGGCCAGGATTCAGAACGAGATGCAGAGGGTGGAATTTCAGGCCGCACACTTTCAGCTTCAGATCGTAGACAAACTGACTCAAGGGCTACGAGACCAAAAAATGGACCAGGGTTTTGCTAATAACATACTCGGGGAGATCGCAAAAGTAGTTGGGGTCCCAGTGGAGCCATTAGAGATAAGCAAAGAGCTTACAAGCCTCAAAAAGGAGAAAGAAGAAGCTGAATGTAGGAAGGAGAGGGCTGAAGCTCTTTTTTTGGATCAGGTTATTAAGGTTCTGTCTCTAGCCGACGCTGCCCGGGACTACCAAGAAATTAAGCAGCAATATTTTCGAAGGGTTTGGGCCATAGAGCATTACGAGACGAAGGAAGAATATATATCGCCTCTCAATTCGTTTATTTGTCAAATTAACGGGACGGTGATGGTTGATCCGGTCAGCCTTTGCACTAACACCACTTGCGAGAGGGCTGCAATCCAAGCATGGTTTGAAAGTGGAAAGAGAACTGACCCTGAAACTGGTGAGTTTCTGAAAGATATGTCTCTGAGGCCTAATTTTCAGCTGAGGCAGTCCATAGAAGAGTGGCAAGAACTTAACTATTGTCTGAAGATTCGATCATCGGAGGCGAAGTTACTGTCAGGTGAAGAACGTTCTGTCGAAGAGGCGCTGATATTGATCCAAGATCTTATGAGAGAAAACTCCATTAACAAGGACTGGATTTCCATCGGAGGGCTTACAGATTTATTAGTCTTGATCCTAGGAAGGTCACATAACAAAGACTTGAAGAGAAAAATTTTGATCACCTTGAAGGATGTCGTAGAAGGGCATGCACGAAATAAGGAACCATTGATAGAAACACAAGGATGGGATCATATTATTTCCTGTCTAGGCTGTAACTCAAGCACAGAAAAGGCTGCAGTTGAATTAATAGACGAGTTACTACATGATACGTCGGGATGGAGTTTGTCTGCTTGCCAGAAACTCGCAAAGCAATGCAATGCCATTAATTTACTTGTTATCGTTCTAAAAGGACCCGAAAGAGAATCGGCTGGAATTGCAGAAAGAATCTTGATGAAGCTTTTCGACACTGACGAAGTGGGCATTTGCAGTGCCGCCATGTCAGGCTGGTATGACCCGCTCGTTAGTCAAATAGTCAGAGGGCCAGAGTCGTCGGCGTTGGCAATGGTGAAAACATTGGTAAATATGGATATTACTGAATCGAATTTGAAGTTCCTTGGTGAGGAAGGGATAGTTCCTCCCTTACTCAAAATGCTATCTGGGAATATTGAGTCCAAAGAGTTGTCCTTGTCTGCTCTGACTAAACTGTCCGATGCCGACTCCAATAAAAAGCTTATCGCAGCTGCTGGCGGAGTTCCTCCGATTCTAAAATTGATGCTTTCTTCCCACATGCCTTCAATAATCGTTGCTAAATGCACTGAAATCGTCGAGAAGATATCTTCCGGCAAAGATGGTATCCGATTATTTGTGGATGGTGATGGGATTCAACTTGAAATGGAATCCATTGTGGCTGGTTTATTGGACCTAACCCCCAACTTAGCTTATAACATTCGAAGACCGACCCTTCGTGCACTTCTCGGTATCTTGAAGTCCGATTCGGAATTGGTCAAGAAAGCGGTTCTCAATGCCAGTGGCCTGGTTATTGTACTCCCTCTTCTTGATGACTCTGACTCGGTAATTAGGGAGATCGCAATATGCTTGCTCTTCCTCTTTTCACAACACGAGGCAGAGGGAGTAGTCAACTACCTGCTGAAGCCGAGAAGGTTAGAGGCTTTGGTCGGGTTTTTAGAGAACGACAAGCCTGATGTTCAGATTGCTTCTGCCGGCTTATTAGCCAACCTGCCAAAATCAGAGAGACCACTGACCATCAGGCTGATCGAATTGAACGGACTCGATTCAATTCTCAATATCTTGAAATCCGGGACTGATGAAGCGAAAGAAAATGCCTTGGGTGCTGTCTTCAGGTTCACGGATCCTACGAATATCGAATCACAGCGAATGTTAGTCGAAAGAGGAGCTTACCCTTTGTTCGTAGACTGTCTATCTTCCGGTTCTTCTACAGCTAAGGCTAGAGCCGCAGCGCTGATTGGGGATCTGTCCACAAGTACTCCAAAGCTCAGCAAATCAGGCAATTCAGCTAATTGTTCATGCTTCCAATTTCGAAAGTCTGCTCTTCCTTATTGTATAGCACATTCTGGGATTTGTCGCGTAAATACGACATTCTGTCTGGTGGAGGCAAATGCTTTGCCGGGTTTGGTCGATCTTTTGAAAGAAGAGGTTCATGCTACTGCCTTCGAGGCGATCCGGGCTCTTTCCACCCTCGTGGTAACCTCTCCTTTGAGAGGAGCTTTTGTTTTACACGATGCAAATGCTATAATTTATGCACTAAAGATTCTGAACTGGGGATCGGATTCCCTCAAAGTTGAGGCGTTGGAGCTTTTGGAGAAGGTGTTTAGATCAAAGGATATGGTGGAATTGTACGGATCGAGAGCTAGACCGCTTCTTGCCGAGTTGAGTAGAGGAAGTATTGTTAGAGACGATGATCGACTCCCCGGGAAAGCTGCGCGGGTACTCGTACTCATCGAAAGATATTCAAAGTCATTTACAAATGTTCCTACACAATAA 3036 44.96 MAMELVPIGTILVVLTKQVIKTATAAKDILIEKESFKALSKHLFDIESVLKELQLQELNDSQAGRHALESLGSEVKRANNLVEKYRNRSRFYLLVQCRHIVNEVQQVTRKIGESLAALSLANTEVLPRISDQVARIQNEMQRVEFQAAHFQLQIVDKLTQGLRDQKMDQGFANNILGEIAKVVGVPVEPLEISKELTSLKKEKEEAECRKERAEALFLDQVIKVLSLADAARDYQEIKQQYFRRVWAIEHYETKEEYISPLNSFICQINGTVMVDPVSLCTNTTCERAAIQAWFESGKRTDPETGEFLKDMSLRPNFQLRQSIEEWQELNYCLKIRSSEAKLLSGEERSVEEALILIQDLMRENSINKDWISIGGLTDLLVLILGRSHNKDLKRKILITLKDVVEGHARNKEPLIETQGWDHIISCLGCNSSTEKAAVELIDELLHDTSGWSLSACQKLAKQCNAINLLVIVLKGPERESAGIAERILMKLFDTDEVGICSAAMSGWYDPLVSQIVRGPESSALAMVKTLVNMDITESNLKFLGEEGIVPPLLKMLSGNIESKELSLSALTKLSDADSNKKLIAAAGGVPPILKLMLSSHMPSIIVAKCTEIVEKISSGKDGIRLFVDGDGIQLEMESIVAGLLDLTPNLAYNIRRPTLRALLGILKSDSELVKKAVLNASGLVIVLPLLDDSDSVIREIAICLLFLFSQHEAEGVVNYLLKPRRLEALVGFLENDKPDVQIASAGLLANLPKSERPLTIRLIELNGLDSILNILKSGTDEAKENALGAVFRFTDPTNIESQRMLVERGAYPLFVDCLSSGSSTAKARAAALIGDLSTSTPKLSKSGNSANCSCFQFRKSALPYCIAHSGICRVNTTFCLVEANALPGLVDLLKEEVHATAFEAIRALSTLVVTSPLRGAFVLHDANAIIYALKILNWGSDSLKVEALELLEKVFRSKDMVELYGSRARPLLAELSRGSIVRDDDRLPGKAARVLVLIERYSKSFTNVPTQ 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11608238 11611514 - BLOR10328 Blo02g00598 56828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00598 1011 Gene3D - 860 1003 IPR011989 -
Blo02g00598 1011 Gene3D - 3 122 IPR036537 GO:0007166
Blo02g00598 1011 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Blo02g00598 1011 Pfam U-box domain 263 328 IPR003613 GO:0004842|GO:0016567
Blo02g00598 1011 SUPERFAMILY RING/U-box 245 328 - -
Blo02g00598 1011 SUPERFAMILY ARM repeat 877 996 IPR016024 -
Blo02g00598 1011 Gene3D - 339 491 IPR011989 -
Blo02g00598 1011 SUPERFAMILY ARM repeat 535 841 IPR016024 -
Blo02g00598 1011 Coils Coil 68 88 - -
Blo02g00598 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 337 IPR013083 -
Blo02g00598 1011 SMART arm_5 873 913 IPR000225 GO:0005515
Blo02g00598 1011 SMART arm_5 712 753 IPR000225 GO:0005515
Blo02g00598 1011 SMART arm_5 536 575 IPR000225 GO:0005515
Blo02g00598 1011 SMART arm_5 755 795 IPR000225 GO:0005515
Blo02g00598 1011 SMART arm_5 407 446 IPR000225 GO:0005515
Blo02g00598 1011 SMART arm_5 669 710 IPR000225 GO:0005515
Blo02g00598 1011 SMART arm_5 576 618 IPR000225 GO:0005515
Blo02g00598 1011 SMART arm_5 798 838 IPR000225 GO:0005515
Blo02g00598 1011 Coils Coil 196 216 - -
Blo02g00598 1011 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1004 - -
Blo02g00598 1011 SUPERFAMILY ARM repeat 195 556 IPR016024 -
Blo02g00598 1011 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 588 IPR000225 GO:0005515
Blo02g00598 1011 Gene3D - 492 636 IPR011989 -
Blo02g00598 1011 Gene3D - 637 856 IPR011989 -
Blo02g00598 1011 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Blo02g00598 1011 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1004 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00598 - - - qsu:111984141 1278.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00313 Blo-Chr2:3177315 Blo02g00598 Blo-Chr2:11608238 1.66E-75 dispersed
Blo02g00598 Blo-Chr2:11608238 Blo04g00011 Blo-Chr4:109096 1.06E-38 dispersed
Blo02g00598 Blo-Chr2:11608238 Blo01g01639 Blo-Chr1:56211543 1.41E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g592 . . . . . Bpe14g01220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00598 . . Bda13g00095 . . Bma02g00814 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018110 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00598 Blo_Chr02 FPKM 98.903458 113.30262 124.074356 120.000687 149.99324 160.478729 146.186859 218.62381 211.109238 189.204407