Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00618 ATGCTACTTTCCAATAGCTGCTTCCAGTTAGCGACAGTTGAACTTCCTCTCCAGAGCTCCTATGAAGCTGATTTTTGGACACCACACTCTCACATATATCTATTTATCTCCCTCCAAATTTCAGCTCAAAAGCCTATATGCAACTCGAGATCTCGTATGAAAGCTGCTCGGAGGTCAGTGAGAATCGACAGATTGAGTCTTCAGCAAAGAAAGGGTGATTTTGACGGTGGTTTTAGTAACGTTGGTGCTGGAAATATTGGAGAAAAATGGAAAACAGATTCCGGAGGAGCCAAAGGTGAACCGATCTGCACCTTTGGTTTGATTGAACTCCACAAGCAGTGTCTCCAACCAGGATGGAATGTGCGTTTTACCTCACTTACACTCTGGATCTACTACCTTAGAGGCAGCAGGGCAAGGAGAGACAATAAAATCTTCAACCAAAACGAACAAGGATTGAAGAAATGGTGGCTCACTCCCTCGGATCAACTCCTAGAAGCTTGGCCGATTGTTCCTCACAAAGAGGGGCAGACAGTGATCAGTGTGTTCGTGGTTGACCGAACCGGAGTTGGATCCTACAGCTACAACTCTGACAATCTCCAGGGCCGAATAAAAGGAGAAGATGAAGGAGTGGGGGGAGGGTCTCTGGATTGCTCTCCGGTCCTCTTTGGCTTCTTCAATTTTGAAGATTTGTGTATGTCGATTCCCTGTTTTTGGTTGTTGCTTCTGAACCGTGGAGGAATGAGGAAACATGTGTACGCTTTGATTTATGTTTACTGGATTGAAGGTACGTACGAGCAGGTGAACAGGTCAAAGACAATTGATGAAGGATTTGCACGGGTGAATCTTGTGGCTGGCTGGGCTAAAGAATTTAAAGGGAATTTCATTGTAAAAAATGGGTTTTGGGTCTCATCTGTATTTTGGATTTCTGGCTTAGCTATCATGTTTTTTCTATTTGTTATTGATAGTTGGGCTTTTTTGGGTGAAGATTTTTGGGAGTTAAATATGGCTGGGATTATGAATGAGGAGTCTGTTGGAAGGTCCATTGAGGGGATTTCAAGTGGACTCCGCAATCAATCTGGGGAGACATTAGCAGAATGGCGGTCTTCTGAGCAGTTGGAAAATGGAACTCCTTCAACATCACCTCCTTATTGGGACTCTGATGATGATGATGATAGTGGACCAAAACCTTCAGAGTTATATGGAAGATATACATGGAGGATAGAGAAGTTTTCTCAGCTCAACAAAAGAGAACTTCGGAGTGATGCGTTTCAGGTTGGTGGTTACAAATGGTATATTTTAATATATCCTCAAGGTTGTGATGTATGCAACCATCTCTCTTTATTTCTCTGTGTTGCAAATCATGACAAACTTCTGCCAGGTTGGAGCCATTTTGCACAGTTTACCATAGCTGTGGTGAATAAAGATCTGAAAAAATCAAAATATTCTGACACATTGCATAGATTCTGGAAGAAAGAACACGATTGGGGATGGAAGAAGTTCATGGAGCTGTCTAAAGTCTTAGATGGCTTCCTTGATGCTGACACTCTCATAATAAAGGCTCAAGTTCAAGTGATCAGGGAAAGAGCAGATCGACCATTTCGTTGCCTGGATTGTCGGTATAGGAGAGAGCTTGTTAGGGTATATTTGACGAATGTTGAGCAAATTTGCCGACGCTTTGTGGAAGAGAGAAGAAGCAAACTTGGGAAGCTGATAGAGGATAAAAATAGATGGTCAAGTTTCTGTGCTTTCTGGTTGGGAATTGACCAAAGTTCTAGACGCCGCATGTCCAGGGAGAAGACTGATGCGATAGTAAAAGTACTTGTAAAACATTTTTTTATAGAGAAGGAAGTCACATCTACTTTAGTGATGGATTCCTTGTATAGTGGACTGAAAGCTCTTGAAGGCCAAACAAAGATGAAGAAAGTGGGGGGGAAACTGTTGGAAGCTGAAGAAATGCCAGCTCCAATTGTTCGCATAGAGAAAGATATTTTTGTTTTAGTAGATGATGTGTTACTACTACTTGAGAGAGCTGCTTTGGAACCATTGCCTCCAAAGGATGAGAAGGGACCCCAGAATCGCACAAAGGAAGGTGGCTTAGGAGAGGATTTCAACAAAGATTCTATTGAACGCGATGAAAGGCGTCTTACTGAATTGGGTCGTAGAACTGTGGAAATATTTGTCCTTGCTCATATATACAGCAATAAAGTTGAGGTTGCGTATCAGGAAGCTGTTGCATTGAAGAGGCAAGAGGAGCTGATTCGTGAAGAAGAGGCAGCATGGCTGGCTGAAAGTGAACAAAAGGCAAAACGTGGTGCAACAGAGAAAGAAAAGAAAGCAAAGAAAAAACAGGCTAAACAGAAACGAAACAATCGGAAAGGAAAGGAAAAAGGAAGAGAAGAAAGGATAATACAGGACATGCATGAGAAAGAAGCTCCTAGTGATGAGAAGAAGGACTCGGTTATGGAGGAGATGCAGCCTGTGCTTGAGAAGCCTGATATGCTGGAAGATGTTTCTGATGTGTCAGATTCGTTGGATGCTGTTGGTGAAGTACTTCATCATGATTCCGAAGATAGAGATGCTAGTCATGTGAATTGGGATACTGACACATCCGAAGTTCATCCTCCCATGGAAGCTAGTAGCAGCTTAGTTTGCCGTTTGACTTCTGCACAGACTGGATCATCTGATAAGAAGGGCTCTTCTGTGATGGATGATAGCTCCTCAACATGTTCTACAGACTCAGTCCCATCAGTGGTAATTAACGGGTCTTACAAAGCCAGCTCCTTCCCTAAATACAATAACCAACAAACATCTATCAGAAGAAAGAACCAACAAGGTAATGCAGCCTATGAGAGGAATACATGGGGAAATGAGACTGACAGTCAGCCATCAGAGGCTGCACCTGATACAGGAAATCAAAGTGATAGGTCTGAAAGTAGCAAGCCTGGTGAATCTGAATCTGAGGCTGCCGTGGGTTCCTTCTCTCATCAGGATCAGTTAAGGGGACTTGAACTTGAAATGGCTAAGAAGGAGAAAGGGGTGGTAGCAGTTCAGCGCAAACCAAGCCCTAAAAAACAGGTTGATACAGAAAGAGCACTTAAAGATAAGACGTCAGTTGTAACATCCTCTTCTCTAAGTACTCAGATAAATCTTCCTACAGCTTTTGAACAGAAGTCTGAGCATCGGAGTAGTGCTTATCTTCAAAAGACGTCTTCAAATGGATCACATGCAAGGGCTGCTCCAGTAGTTACTTCACCCCATTTAGCATGTGCATCAAAGAACGAGGTTCAAAAGATTCCAACCCCAAAAATATCTGAGAAGGCTTTGGCACAACAATTTACCATGATGTCTAGACCTTCTAGTGCTCCGCTGATCCCTGCTCTCAGGCACCCTGCTCCTGTTGTTTCTGTGGCGAAAACAACCCAGCTACTTTCCTGTTCTGCAAGTGCTGCTGGTCGGTTAGGTCCTGACTCCTTACCTGCTACCCTTAGTTATGCACCACCTCAGTCATACAAAAATGCCATGATGGGTAACCACATTGCTTCTATTACTACCAGTTTCACTCAGCCTAGCTCTTCAACTGCAGGAGTAAATCAATCTCCGGTATACTCACAAGCAACCACCTTGGTATCTGCGCCAACGTTTTCATCACAAAATTCTGACAGGTTGGATTCAAATTCAATCAAGTCAAGTATTCCTCTTGGCATGGTCAGTAGGGATCTCTTACCAAATGGCATGCAGTTGATGGATGGTTCCCAAATGGATTGTGGCAGGAGCGTCCATTTCAATACCTTGTTGAATGATGGTCAGAACCTGGATTTTTACACCAGACTGCATGGGGGAATTCGTGAGCAATTGTCGGCTGACTTCTCTTCTTGTATGTCTGGCTGCCATGTGCAAGGTTTGACCGAAGAATTCCCCCATCTTGATATCATCAATGATCTACTTGACGAAGAACATTGTGTGGGGAAGGCATCTAGGACGAGCTCAATATTCCCATGTCTCAGCAATGGACCAACCATTTTGAATAGGCAGTTTTCTCTTCCTGGCGATGTATCTGGTGATGTGGGTTCGGCAACCAGCTCTTGCAGGTTTGAGCGGACCCATAGTTATCACGATGGAGCATTCCGAAGGGGCTACAGAACTTCAGTTGGGCATTTTGAACCAGGTATGGATTATATGCCACCTGGCCGTACACTACCTTATGTCAATGGTCAGGTTGATGGGATGATTTCCAACCATTGGCGGATCAATTCGGATCCATCTTTACTTGGTTCAATCAGCTCAGAATATGAAGCCCACCCCTATCTCAATCCAGAGTACTCAACCATGGCATGCGGAATAAATGGCTACACTACTTTCCGGCCTTCAAATGGGCACTGA 4380 43.74 MLLSNSCFQLATVELPLQSSYEADFWTPHSHIYLFISLQISAQKPICNSRSRMKAARRSVRIDRLSLQQRKGDFDGGFSNVGAGNIGEKWKTDSGGAKGEPICTFGLIELHKQCLQPGWNVRFTSLTLWIYYLRGSRARRDNKIFNQNEQGLKKWWLTPSDQLLEAWPIVPHKEGQTVISVFVVDRTGVGSYSYNSDNLQGRIKGEDEGVGGGSLDCSPVLFGFFNFEDLCMSIPCFWLLLLNRGGMRKHVYALIYVYWIEGTYEQVNRSKTIDEGFARVNLVAGWAKEFKGNFIVKNGFWVSSVFWISGLAIMFFLFVIDSWAFLGEDFWELNMAGIMNEESVGRSIEGISSGLRNQSGETLAEWRSSEQLENGTPSTSPPYWDSDDDDDSGPKPSELYGRYTWRIEKFSQLNKRELRSDAFQVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDLKKSKYSDTLHRFWKKEHDWGWKKFMELSKVLDGFLDADTLIIKAQVQVIRERADRPFRCLDCRYRRELVRVYLTNVEQICRRFVEERRSKLGKLIEDKNRWSSFCAFWLGIDQSSRRRMSREKTDAIVKVLVKHFFIEKEVTSTLVMDSLYSGLKALEGQTKMKKVGGKLLEAEEMPAPIVRIEKDIFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKEGGLGEDFNKDSIERDERRLTELGRRTVEIFVLAHIYSNKVEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGATEKEKKAKKKQAKQKRNNRKGKEKGREERIIQDMHEKEAPSDEKKDSVMEEMQPVLEKPDMLEDVSDVSDSLDAVGEVLHHDSEDRDASHVNWDTDTSEVHPPMEASSSLVCRLTSAQTGSSDKKGSSVMDDSSSTCSTDSVPSVVINGSYKASSFPKYNNQQTSIRRKNQQGNAAYERNTWGNETDSQPSEAAPDTGNQSDRSESSKPGESESEAAVGSFSHQDQLRGLELEMAKKEKGVVAVQRKPSPKKQVDTERALKDKTSVVTSSSLSTQINLPTAFEQKSEHRSSAYLQKTSSNGSHARAAPVVTSPHLACASKNEVQKIPTPKISEKALAQQFTMMSRPSSAPLIPALRHPAPVVSVAKTTQLLSCSASAAGRLGPDSLPATLSYAPPQSYKNAMMGNHIASITTSFTQPSSSTAGVNQSPVYSQATTLVSAPTFSSQNSDRLDSNSIKSSIPLGMVSRDLLPNGMQLMDGSQMDCGRSVHFNTLLNDGQNLDFYTRLHGGIREQLSADFSSCMSGCHVQGLTEEFPHLDIINDLLDEEHCVGKASRTSSIFPCLSNGPTILNRQFSLPGDVSGDVGSATSSCRFERTHSYHDGAFRRGYRTSVGHFEPGMDYMPPGRTLPYVNGQVDGMISNHWRINSDPSLLGSISSEYEAHPYLNPEYSTMACGINGYTTFRPSNGH 1459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12595007 12615581 - BLOR10348 Blo02g00618 56848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00618 1459 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 385 529 IPR008974 GO:0005515
Blo02g00618 1459 SUPERFAMILY TRAF domain-like 401 527 - -
Blo02g00618 1459 SMART math_3 402 506 IPR002083 GO:0005515
Blo02g00618 1459 MobiDBLite consensus disorder prediction 873 993 - -
Blo02g00618 1459 MobiDBLite consensus disorder prediction 1001 1034 - -
Blo02g00618 1459 CDD MATH 401 523 IPR002083 GO:0005515
Blo02g00618 1459 MobiDBLite consensus disorder prediction 1053 1078 - -
Blo02g00618 1459 MobiDBLite consensus disorder prediction 793 837 - -
Blo02g00618 1459 MobiDBLite consensus disorder prediction 764 837 - -
Blo02g00618 1459 ProSiteProfiles MATH/TRAF domain profile. 400 522 IPR002083 GO:0005515
Blo02g00618 1459 MobiDBLite consensus disorder prediction 764 779 - -
Blo02g00618 1459 MobiDBLite consensus disorder prediction 850 1038 - -
Blo02g00618 1459 PANTHER MEPRIN AND TRAF (MATH)-LIKE DOMAIN PROTEIN 335 1458 - -
Blo02g00618 1459 MobiDBLite consensus disorder prediction 366 393 - -
Blo02g00618 1459 Pfam MATH domain 407 524 IPR002083 GO:0005515
Blo02g00618 1459 MobiDBLite consensus disorder prediction 366 383 - -
Blo02g00618 1459 MobiDBLite consensus disorder prediction 682 706 - -
Blo02g00618 1459 MobiDBLite consensus disorder prediction 850 866 - -
Blo02g00618 1459 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 335 1458 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00618 - - - qsu:112033143 1365.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00618 Blo07g00248 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00618 Blo-Chr2:12595007 Blo13g00021 Blo-Chr13:314392 0 dispersed
Blo02g00618 Blo-Chr2:12595007 Blo02g00622 Blo-Chr2:12786049 7.88E-10 proximal
Blo01g01336 Blo-Chr1:50919266 Blo02g00618 Blo-Chr2:12595007 6.71E-11 transposed
Blo03g00478 Blo-Chr3:16406904 Blo02g00618 Blo-Chr2:12595007 3.38E-11 transposed
Blo03g00525 Blo-Chr3:19887622 Blo02g00618 Blo-Chr2:12595007 2.72E-14 transposed
Blo18g00650 Blo-Chr18:11911834 Blo02g00618 Blo-Chr2:12595007 2.01E-11 transposed
Blo02g00618 Blo-Chr2:12595007 Blo07g00248 Blo-Chr7:3047060 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g630 . . . . . Bpe14g01234 . . . . . Cma14g01788 Car06g01154 Car14g01608 . Cpe08g00316 Cpe03g01496 . . . . . . . . . . . . . . . Cone15ag0145 Cone7ag0302 Cone4ag0302 Lsi05g01689 . . Cme06g00531 Blo02g00618 Blo07g00248 Bda11g00616 Bda13g00083 . Bpe13g00570 Bma02g00802 Bma06g01587 . Cmo06g01350 Cmo14g01824 . . . . . . . . . . . . . Cla05g00474 Cam05g0515 Cec05g0529 Cco05g0529 Clacu05g0516 Cmu05g0490 Cre05g0556 . Csa03g01250 Chy06g00504 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003455 2 0 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00618 Blo_Chr02 FPKM 3.46077 3.626949 3.574047 3.567116 7.749997 7.628922 7.47617 5.749519 5.100926 5.359958