Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00620 ATGGAAAGAGGTAGTTTTAGCATTAGTCTGAAAGATCGTAGCATTGTAACCAGAGAAATTGAAGGAGATCATCAAAGCTCAAAGAAAAGCCTTATGTCTTTTTGGGGATGCAACACTAAAGCCAATTACCCGGAAGAAGACTATTTAAAGGGTTTTTCATGGCCTCCAAGATCTTACACTTGCAGCTTCTGCAAAAGGGAATTCAAATCAGCTCAAGCTTTAGGTGGCCATATGAATGTTCACAGGAGAGATAGAGCCAGGCTCAGACAGTCTCCTCCATTGGAAGGTGAGCAAAATCTTCCTCAACCAAACCCTAACTTCAACACCTTCTCTACTCTTTCAGCAAAGCTCGACCCGTCTCCCGACCCTTTACCTTCTCTGATTTCAATTCCACTTCTGTCTTTATCTTCTTCTTCTACTACTCCGAGCGAAATCAAGAAATGCCCTACTATCAAAATGAAAGTTTCAGATATAAGGAAAACCCAGAATGCAAAACCTGCTTTTGGGGTCGGAAAAGATGTGGTTAGGTTGGAGAAAGAGATCAGTTTTCTGGGTGATTCAAAGGAGGATTTGGATTTGGAGCTTCGACTAGGATACTTATGA 603 41.63 MERGSFSISLKDRSIVTREIEGDHQSSKKSLMSFWGCNTKANYPEEDYLKGFSWPPRSYTCSFCKREFKSAQALGGHMNVHRRDRARLRQSPPLEGEQNLPQPNPNFNTFSTLSAKLDPSPDPLPSLISIPLLSLSSSSTTPSEIKKCPTIKMKVSDIRKTQNAKPAFGVGKDVVRLEKEISFLGDSKEDLDLELRLGYL 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12678647 12679249 + BLOR10350 Blo02g00620 56850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00620 200 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Blo02g00620 200 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Blo02g00620 200 Gene3D Classic Zinc Finger 55 103 - -
Blo02g00620 200 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Blo02g00620 200 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 32 199 - -
Blo02g00620 200 Pfam C2H2-type zinc finger 59 83 - -
Blo02g00620 200 PANTHER OS07G0101800 PROTEIN 32 199 - -
Blo02g00620 200 SMART c2h2final6 59 81 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00620 - - - rcu:8276170 155.221
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00620 Blo-Chr2:12678647 Blo03g00126 Blo-Chr3:3731876 1.12E-23 dispersed
Blo02g00620 Blo-Chr2:12678647 Blo07g00249 Blo-Chr7:3072728 2.17E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g642 . . . . . Bpe14g01236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00520 Blo02g00620 . . Bda13g00081 . . . . . . . . . . . . . . . . . . . . Cla05g00469 Cam05g0510 Cec05g0524 Cco05g0525 Clacu05g0511 Cmu05g0487 Cre05g0551 . Csa03g01241 Chy06g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012411 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12036 PF13912 zf-C2H2_6 4.50E-07 CL0361 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00620 Blo_Chr02 FPKM 33.454166 24.913769 32.398575 31.878191 55.406334 65.354874 46.653755 41.59771 39.387016 40.368317