Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00628 ATGGTCAATTGCTTGCTGCTCTTCTTCAACGACGCACAAAGACAACCTGCTCTTCTCCCTCTCTCCCTCCCTAAAATTTTCTCTCTCTGTAAAATGGGTATTTCATGGAGCAATCGAAGACGAAACAACTACTTCCAATACCCGCCGCCGCCGCCGCCGCCTTACCAACACCCTTCTTCTTACTATTATACAGCTGATAATCCTCCTCTTCTTCCTCCTCCTCCTCCACCTCAACCTCCACCCCCTCCGCCGCATTCCCATTACTATTTCGCCGGTTATAATTCAAGCAATTACGCTAATTCTTCTGCTGGTCGCTTCAATTCCCATCCCCATTATGCCAATCAGACCAATTGGTGGCCTGCAGTTCGTCCGCCGTTGCCGCCCCGGCTTCCTCCGATTGAGCACCGGCAAGCAAAGAAAATCAGAAATGATGTGAATGTTCATAAGGATACGTTAAGACTTGAGGTAGATAAGCTGAACAACGATCATCACTTGGTATCTTTCGTTTTCGATGCCTTATATGACGGGAGCATTACTGTGTTTTACTTTGCTAAGGAAGAGCCAAATTGTAGATTTATTCCACTATATCCTGGAGGCTTTACTCCTGTAAAAATCCCCTTCCGAAAAGGTCCTGGCCAGAAATTTACTCAGCCTTCAGGAACTGGTATTGATTTAGGATTCTTTGCATTGGAAGAGCTCGCCAAACCATCATCCGAAGAAGATATATTTCCTCTTGTCATATCTGCTGAGACAAGCTCACAAAATGTATCTACTGGCGAATATAGAGGGGAACGTCTTTCAGGCACATCTCCTCATATGCAGATTACTCAGGCTGTATTTGAAAAGAACAATGGCGATTCCTTCCAAGTCAAAGTAATTAGGCAATTACTATGGATTGATGAAGTTCGTTACGAGCTGCGAGAGATATTTGGAATTGGTAGCTCATCAACCGAAAATTTTAATGACACTGCCTCAGACGAGTGTGTCATTTGTATGACTGAGCCCAAGGATACTGCAGTGTTACCCTGCCGACATATGTGTTTGTGTAGTGAATGTGCAAAAGAGCTGAAGCTTCAATCCAATAAATGCCCTATATGTCGTCAACCAATTGAGGAACTTTTGGAGATCAAAATAAACAACGGTGATATATAG 1152 43.92 MVNCLLLFFNDAQRQPALLPLSLPKIFSLCKMGISWSNRRRNNYFQYPPPPPPPYQHPSSYYYTADNPPLLPPPPPPQPPPPPPHSHYYFAGYNSSNYANSSAGRFNSHPHYANQTNWWPAVRPPLPPRLPPIEHRQAKKIRNDVNVHKDTLRLEVDKLNNDHHLVSFVFDALYDGSITVFYFAKEEPNCRFIPLYPGGFTPVKIPFRKGPGQKFTQPSGTGIDLGFFALEELAKPSSEEDIFPLVISAETSSQNVSTGEYRGERLSGTSPHMQITQAVFEKNNGDSFQVKVIRQLLWIDEVRYELREIFGIGSSSTENFNDTASDECVICMTEPKDTAVLPCRHMCLCSECAKELKLQSNKCPICRQPIEELLEIKINNGDI 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13285889 13288545 - BLOR10358 Blo02g00628 56858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00628 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 32 382 - -
Blo02g00628 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 381 IPR013083 -
Blo02g00628 383 PANTHER MAHOGUNIN 32 382 IPR045194 GO:0061630
Blo02g00628 383 SMART ring_2 328 366 IPR001841 -
Blo02g00628 383 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 327 367 IPR045195 -
Blo02g00628 383 ProSiteProfiles Zinc finger RING-type profile. 328 367 IPR001841 -
Blo02g00628 383 MobiDBLite consensus disorder prediction 67 86 - -
Blo02g00628 383 Pfam Zinc finger, C3HC4 type (RING finger) 326 372 - -
Blo02g00628 383 MobiDBLite consensus disorder prediction 66 86 - -
Blo02g00628 383 SUPERFAMILY RING/U-box 327 373 - -
Blo02g00628 383 SUPERFAMILY Formin homology 2 domain (FH2 domain) 72 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00628 Blo-Chr2:13285889 Blo07g01402 Blo-Chr7:34075054 3.07E-80 dispersed
Blo07g00198 Blo-Chr7:2445082 Blo02g00628 Blo-Chr2:13285889 9.41E-06 dispersed
Blo06g00750 Blo-Chr6:30701878 Blo02g00628 Blo-Chr2:13285889 3.38E-06 transposed
Blo07g00207 Blo-Chr7:2624604 Blo02g00628 Blo-Chr2:13285889 1.76E-24 transposed
Blo02g00628 Blo-Chr2:13285889 Blo07g00266 Blo-Chr7:3191569 2.67E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00628 - - csv:101203938 455.677