Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00636 ATGTTCAACCCATTATCAGCTTCACTCTTCCTAGCAATTGCACTTGCCTCGGTGCATCTGGAAGCCATCAAAGCTGCAGTTGATCCCGCAACCAGCACTGAGCATGAACCTGTTCTTGAAATGTACATGCACGACATTCTCGGAGGCTTTATTCCTCCACAAGGAGGTGTAGCCATCCCCAATGCCAATGGTGCCATTCCCACTGTCAACGGCATCCCTCTTGGAACAGGCTTGGCTGGCACAAATTTTGTGGGCAATCAAACTAGTAGTCATAATCTAAATATGGGTAATGTTCAGACACAGCTGGGTCCTGATGGTTTGGGACTAGGCTTCGGAACTATCACCGTCATAGATGATGCGCTAACCACCTCTCCTGAACTTGGTTCACAGACAATCGGGAATGCTCAGGGGGTTTATGTGGCCAGCTTGGCAGACGGTTCCACCCAGATGATGGCATTTACAGCCATGATTGAAGTGACGGGCGGGACTGGCAAGTTCAAGCATACTAACGGATTTGCAGAAGTGAGGTCTCTCATTCCTTCTGGTCAACACGTCACAGTCGGTACAGAAACATTGTTGAGGATCACTGTTCATTTAAGCTACTGA 606 48.51 MFNPLSASLFLAIALASVHLEAIKAAVDPATSTEHEPVLEMYMHDILGGFIPPQGGVAIPNANGAIPTVNGIPLGTGLAGTNFVGNQTSSHNLNMGNVQTQLGPDGLGLGFGTITVIDDALTTSPELGSQTIGNAQGVYVASLADGSTQMMAFTAMIEVTGGTGKFKHTNGFAEVRSLIPSGQHVTVGTETLLRITVHLSY 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14314729 14315486 - BLOR10366 Blo02g00636 56866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00636 201 Pfam Dirigent-like protein 103 157 IPR004265 -
Blo02g00636 201 PANTHER DIRIGENT PROTEIN 16 49 158 - -
Blo02g00636 201 PANTHER DIRIGENT PROTEIN 16 6 50 - -
Blo02g00636 201 PANTHER DIRIGENT PROTEIN 16 158 201 - -
Blo02g00636 201 PANTHER DIRIGENT PROTEIN 24-RELATED 49 158 IPR004265 -
Blo02g00636 201 PANTHER DIRIGENT PROTEIN 24-RELATED 6 50 IPR004265 -
Blo02g00636 201 PANTHER DIRIGENT PROTEIN 24-RELATED 158 201 IPR004265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00636 - - - qlo:115949997 253.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00636 Blo-Chr2:14314729 Blo13g00750 Blo-Chr13:30265873 1.80E-23 dispersed
Blo02g00636 Blo-Chr2:14314729 Blo03g01116 Blo-Chr3:37647499 2.51E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g832 . . . . . . . . . . . Cma14g01865 . . . Cpe08g00375 Cpe03g01563 . . . . . . . . . . . . . . . . . . Lsi05g01799 . . Cme06g00420 Blo02g00636 . Bda11g00655 Bda13g00030 . . Bma02g00741 Bma06g01622 . . Cmo14g01910 . . . . . . . . . . . . . Cla05g00382 Cam05g0415 Cec05g0420 Cco05g0420 Clacu05g0411 Cmu05g0394 Cre05g0456 . Csa03g01139 Chy06g00405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006899 2 1 1 2 0 1 0 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00636 Blo_Chr02 FPKM 19.800364 20.496836 21.512238 23.365751 15.61645 13.375711 13.377039 14.470465 18.463615 15.746994