Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00646 ATGGCTCCATCCAATTCGAAAGAATGGAGTCAATTATGCAGCGTGGTCAGCTATGAGGAGAAAAGACTGGGGGCGGGGCCCACCAATCTCTTATCCAACTTTCAGATCAAGGACCCTGGACCTTTCGCATTCTCGTTCGTGAACGGCAATCCTTGGAAGAAAGTATCAAAGCTGACGGTCATCATGTGGATGTGGGAAATGGAGAGCATGGAAGAAAAAGCTTTGAAATCAAGCTTTCGCCTGAAATTGGCTGCGAAGTCGACACAGCCATCCATTTTGGAAGACTCGTCGACCTGGAACGGAACAAACGCCGGTTCCGGCGACGATTTTGCAGTAGAAGAGTATTTTAACTTTTCTAATGAAGATTTAGAACAATGCTCTTCTGCAGAGGAGGAAGAAGAAGAAGAGTCGGAAAAGGATAGACTCTCTGTTTCTTTGCTGGACCCAGTGTATGATAGTAATTCGAACCCCGCCAGTTTCTTTTCCACCGGCGATGATGACTCTCTTCTTTCCAAGCTCGCCGTTCCGGGCGATGATTTAGCTGCCCTTGAATGGGTATCTCATTTTGTGGACGACTCTCTCTTAGAATTCTCGCTTCTGCAACCCGCTGTTAAAACGAAACCCCAAACTCGTTCTGAAGTGGAAAGTAGACCGATAGTTTCAGAAGTTTCGTGTTTATCTTCACCTATTCCGGCGAAACCCCGAACCAAAAAGGCCAAAACATCCGGCCGAGTTTGGTCTGGGTCTCTTCTGACTGAATCATCGTTGTCGTCTTCTTCTTCTTCTTCGTCATTGTCGTCGTCGTCTGGGTTTACTGGAGCTTCTTGCCTTTTCTTCACCAAATCGGGCCAGGACATGGAGAATTGCTATGCCGTGGCTGAACCACCAGCGAAGAGGCAGAAAAAGAAATCAGCGGATGAAGCGGACGGTTCAGCTAGCGGAACTCTGCTTCAGCGGCGGTGCAGTCATTGCCAGGTTCAGAAGACCCCGCAGTGGCGAACCGGTCCATTCGGGGCCAAAACGCTCTGCAATGCTTGTGGGGTCCGGTACAAGTCCGGTCGCCTTTTCCCGGAGTACAGACCGGCCTGTAGTCCCACTTTTTCCGGCGACATCCATTCCAATAGTCATCGTAAGGTTTTGGAGTTGAGAAAGAGGAAGGACACAGACGCTCCGGCTTCTGGGTTTGGTCGAATGGTTCAAAGTTTTTAG 1209 49.3 MAPSNSKEWSQLCSVVSYEEKRLGAGPTNLLSNFQIKDPGPFAFSFVNGNPWKKVSKLTVIMWMWEMESMEEKALKSSFRLKLAAKSTQPSILEDSSTWNGTNAGSGDDFAVEEYFNFSNEDLEQCSSAEEEEEEESEKDRLSVSLLDPVYDSNSNPASFFSTGDDDSLLSKLAVPGDDLAALEWVSHFVDDSLLEFSLLQPAVKTKPQTRSEVESRPIVSEVSCLSSPIPAKPRTKKAKTSGRVWSGSLLTESSLSSSSSSSSLSSSSGFTGASCLFFTKSGQDMENCYAVAEPPAKRQKKKSADEADGSASGTLLQRRCSHCQVQKTPQWRTGPFGAKTLCNACGVRYKSGRLFPEYRPACSPTFSGDIHSNSHRKVLELRKRKDTDAPASGFGRMVQSF 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15245325 15247400 + BLOR10376 Blo02g00646 56876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00646 402 SMART GATA_3 315 369 IPR000679 GO:0006355|GO:0043565
Blo02g00646 402 Gene3D - 316 364 IPR013088 GO:0006355|GO:0008270
Blo02g00646 402 PANTHER GATA TRANSCRIPTION FACTOR 69 402 - -
Blo02g00646 402 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 318 378 - -
Blo02g00646 402 MobiDBLite consensus disorder prediction 294 314 - -
Blo02g00646 402 PANTHER GATA TRANSCRIPTION FACTOR 69 402 - -
Blo02g00646 402 Pfam GATA zinc finger 321 354 IPR000679 GO:0006355|GO:0043565
Blo02g00646 402 Coils Coil 120 140 - -
Blo02g00646 402 ProSiteProfiles GATA-type zinc finger domain profile. 319 351 IPR000679 GO:0006355|GO:0043565
Blo02g00646 402 CDD ZnF_GATA 320 377 IPR000679 GO:0006355|GO:0043565
Blo02g00646 402 ProSitePatterns GATA-type zinc finger domain. 321 346 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00646 - - - vvi:100255460 298.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00646 Blo-Chr2:15245325 Blo04g00899 Blo-Chr4:10469409 1.61E-61 dispersed
Blo02g00646 Blo-Chr2:15245325 Blo16g00063 Blo-Chr16:1975158 1.15E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12038 PF00320 GATA 1.70E-15 CL0167 Blo TF