Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00650 ATGTCTTCCACCTTCAGCGGCGATGAAACTGCTCCCTTCTTCGGCTTTCTTGGCGCCGCTGCTGCCCTTGTCTTCTCCTGTATGGGAGCTGCGTATGGTACAGCAAAAAGTGGTGTTGGTGTGGCTTCAATGGGAGTTATGAGACCCGAGCTGGTGATGAAATCTATTGTTCCAGTAGTTATGGCTGGAGTTTTGGGTATCTATGGCTTGATTATTGCTGTAATTATTAGCACGGGGATCAATCCCAAGGCCAAATCATATTACCTGTTTGATGGTTATGCTCATTTGTCATCTGGTCTTGCTTGTGGCCTTGCTGGGCTCTCAGCCGGAATGGCAATTGGTATTGTTGGTGATGCTGGTGTCAGGGCCAATGCACAGCAGCCAAAACTTTTTGTAGGGATGATTTTGATTCTCATCTTCGCGGAAGCACTGGCTCTCTATGGGCTCATTGTTGGCATCATCTTATCTTCCCGAGCTGGGCAATCCAGAGCAGAGTAG 498 48.39 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15808163 15810008 + BLOR10380 Blo02g00650 56880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00650 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Blo02g00650 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Blo02g00650 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Blo02g00650 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Blo02g00650 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo02g00650 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo02g00650 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo02g00650 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo02g00650 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Blo02g00650 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Blo02g00650 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Blo02g00650 165 Gene3D - 11 162 IPR035921 -
Blo02g00650 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Blo02g00650 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00650 K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit - cit:102607521 288.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00650 Blo-Chr2:15808163 Blo17g00753 Blo-Chr17:23845470 8.61E-83 dispersed
Blo02g00650 Blo-Chr2:15808163 Blo18g00785 Blo-Chr18:22701057 1.24E-106 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00892 . 9 451 Primary Pumps ATPases(2) AT1G10130 79.5 2.5e-196 682.9
Blo17g00891 . 71 403 Primary Pumps ATPases(2) AT1G10130 79.9 7.3e-156 548.5
Blo17g00890 . 87 219 Primary Pumps ATPases(2) AT1G10130 88.0 9.2e-58 222.6
Blo13g01100 BCT 387 1129 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1175.2
Blo14g00151 BCT 379 1151 Primary Pumps ATPases(2) AT2G28520 74.6 0.0e+00 1170.6
Blo13g00540 BCT 104 868 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-280 961.8
Blo17g00765 . 2 774 Primary Pumps ATPases(2) AT2G28520 55.6 5.0e-251 864.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G28520 54.7 2.8e-121 433.3
Blo13g00540 BCT 104 873 Primary Pumps ATPases(2) AT2G21410 77.0 0.0e+00 1179.9
Blo17g00765 . 3 774 Primary Pumps ATPases(2) AT2G21410 63.2 8.7e-288 986.5
Blo13g01100 BCT 387 1134 Primary Pumps ATPases(2) AT2G21410 59.4 3.9e-264 907.9
Blo14g00151 BCT 377 1156 Primary Pumps ATPases(2) AT2G21410 57.7 2.5e-263 905.2
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G21410 74.4 4.6e-164 575.5
Blo13g00540 BCT 104 873 Primary Pumps ATPases(2) AT4G39080 77.5 0.0e+00 1185.6
Blo17g00765 . 3 771 Primary Pumps ATPases(2) AT4G39080 64.1 6.7e-288 986.9
Blo14g00151 BCT 377 1156 Primary Pumps ATPases(2) AT4G39080 58.2 6.3e-262 900.6
Blo13g01100 BCT 387 1134 Primary Pumps ATPases(2) AT4G39080 60.0 1.4e-261 899.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT4G39080 76.9 9.6e-170 594.3
Blo02g00650 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.3e-61 230.3
Blo18g00785 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 96.4 1.5e-57 219.2
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT4G34720 89.1 2.6e-54 208.4
Blo15g00664 . 143 245 Primary Pumps ATPases(2) AT4G34720 94.4 2.8e-40 161.8
Blo02g00650 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.4e-67 250.8
Blo18g00785 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.9e-63 239.2
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT1G75630 80.1 1.7e-51 199.5
Blo02g00650 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Blo18g00785 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 6.0e-71 263.8
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT2G16510 89.1 8.7e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT2G16510 94.3 3.5e-39 158.3
Blo02g00650 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Blo18g00785 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-52 202.2
Blo17g00753 BCT 1 95 Primary Pumps ATPases(2) AT1G19910 100.0 1.3e-38 156.0
Blo15g00664 . 144 238 Primary Pumps ATPases(2) AT1G19910 98.9 5.0e-38 154.1
Blo12g01087 BCT 5 175 Primary Pumps ATPases(2) AT2G25610 88.9 1.6e-69 259.6
Blo01g01371 BCT 10 198 Primary Pumps ATPases(2) AT2G25610 75.7 4.7e-66 248.1
Blo02g00650 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Blo18g00785 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 96.4 4.1e-57 217.6
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT4G38920 89.1 7.3e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT4G38920 94.3 3.0e-39 158.3
Blo01g01371 BCT 1 198 Primary Pumps ATPases(2) AT4G32530 77.1 1.7e-78 289.3
Blo12g01087 BCT 2 175 Primary Pumps ATPases(2) AT4G32530 69.6 1.3e-65 246.5
Blo13g01094 BCT 1 1065 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1685.2
Blo14g00140 BCT 1 1064 Primary Pumps ATPases(2) AT1G07810 79.8 0.0e+00 1668.7
Blo17g00892 . 44 451 Primary Pumps ATPases(2) AT1G07810 50.3 1.0e-110 398.7
Blo13g01094 BCT 1 1065 Primary Pumps ATPases(2) AT1G07670 79.7 0.0e+00 1680.6
Blo14g00140 BCT 1 1064 Primary Pumps ATPases(2) AT1G07670 79.5 0.0e+00 1669.1
Blo17g00892 . 9 451 Primary Pumps ATPases(2) AT1G10130 79.5 2.5e-196 682.9
Blo17g00891 . 71 403 Primary Pumps ATPases(2) AT1G10130 79.9 7.3e-156 548.5
Blo17g00890 . 87 219 Primary Pumps ATPases(2) AT1G10130 88.0 9.2e-58 222.6
Blo13g01094 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1322.8
Blo14g00140 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 65.2 0.0e+00 1308.5
Blo17g00892 . 66 451 Primary Pumps ATPases(2) AT4G00900 51.1 5.4e-109 392.9
Blo03g01102 . 659 784 Primary Pumps ATPases(2) AT4G02620 81.7 6.1e-55 210.3
Blo06g00430 . 1 126 Primary Pumps ATPases(2) AT4G02620 80.2 8.0e-55 209.9
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT1G76030 96.4 2.2e-262 901.4
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT1G76030 96.2 3.7e-262 900.6
Blo17g00662 . 409 544 Primary Pumps ATPases(2) AT1G76030 64.0 4.0e-38 156.4
Blo07g01401 . 1 110 Primary Pumps ATPases(2) AT3G01390 80.0 2.4e-39 158.3
Blo16g00711 . 1 369 Primary Pumps ATPases(2) AT1G12840 79.2 2.0e-170 595.5
Blo04g01241 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.8 3.0e-117 418.3
Blo13g00310 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 7.4e-116 413.7
Blo07g01085 . 5 433 Primary Pumps ATPases(2) AT3G42050 70.3 6.5e-173 604.0
Blo02g00650 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Blo18g00785 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 6.0e-71 263.8
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT2G16510 89.1 8.7e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT2G16510 94.3 3.5e-39 158.3
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT4G38510 97.7 4.3e-266 913.7
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT4G38510 97.4 5.6e-266 913.3
Blo17g00662 . 423 544 Primary Pumps ATPases(2) AT4G38510 67.2 2.6e-37 153.7
Blo02g01135 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.7 8.5e-69 256.9
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT1G20260 96.0 1.1e-261 899.0
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT1G20260 96.0 1.8e-261 898.3
Blo17g00662 . 409 544 Primary Pumps ATPases(2) AT1G20260 63.2 8.8e-38 155.2
Blo13g01100 BCT 387 1129 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1175.2
Blo14g00151 BCT 379 1151 Primary Pumps ATPases(2) AT2G28520 74.6 0.0e+00 1170.6
Blo13g00540 BCT 104 868 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-280 961.8
Blo17g00765 . 2 774 Primary Pumps ATPases(2) AT2G28520 55.6 5.0e-251 864.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G28520 54.7 2.8e-121 433.3
Blo11g00688 . 43 350 Primary Pumps ATPases(2) AT3G28715 91.2 2.7e-166 581.6
Blo02g01135 BCT 1 207 Primary Pumps ATPases(2) AT4G11150 79.7 4.1e-86 314.7
Blo06g00777 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1171.4
Blo05g00009 . 1 643 Primary Pumps ATPases(2) AT1G78900 90.8 0.0e+00 1164.4
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT1G76030 96.4 2.2e-262 901.4
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT1G76030 96.2 3.7e-262 900.6
Blo17g00662 . 409 544 Primary Pumps ATPases(2) AT1G76030 64.0 4.0e-38 156.4
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT4G38510 97.7 4.3e-266 913.7
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT4G38510 97.4 5.6e-266 913.3
Blo17g00662 . 423 544 Primary Pumps ATPases(2) AT4G38510 67.2 2.6e-37 153.7
Blo04g00583 BCT 435 903 Primary Pumps ATPases(2) AT1G20260 96.0 1.1e-261 899.0
Blo13g00496 BCT 37 505 Primary Pumps ATPases(2) AT1G20260 96.0 1.8e-261 898.3
Blo17g00662 . 409 544 Primary Pumps ATPases(2) AT1G20260 63.2 8.8e-38 155.2
Blo16g00711 . 1 369 Primary Pumps ATPases(2) AT1G12840 79.2 2.0e-170 595.5
Blo04g01241 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.8 3.0e-117 418.3
Blo13g00310 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 7.4e-116 413.7
Blo02g01135 BCT 1 207 Primary Pumps ATPases(2) AT4G11150 79.7 4.1e-86 314.7
Blo02g01135 BCT 1 207 Primary Pumps ATPases(2) AT3G08560 67.9 3.5e-72 268.5
Blo02g01135 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.7 8.5e-69 256.9
Blo03g01102 . 659 784 Primary Pumps ATPases(2) AT4G02620 81.7 6.1e-55 210.3
Blo06g00430 . 1 126 Primary Pumps ATPases(2) AT4G02620 80.2 8.0e-55 209.9
Blo07g01401 . 1 110 Primary Pumps ATPases(2) AT3G01390 80.0 2.4e-39 158.3
Blo07g01085 . 5 433 Primary Pumps ATPases(2) AT3G42050 70.3 6.5e-173 604.0
Blo13g01100 BCT 387 1129 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1175.2
Blo14g00151 BCT 379 1151 Primary Pumps ATPases(2) AT2G28520 74.6 0.0e+00 1170.6
Blo13g00540 BCT 104 868 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-280 961.8
Blo17g00765 . 2 774 Primary Pumps ATPases(2) AT2G28520 55.6 5.0e-251 864.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G28520 54.7 2.8e-121 433.3
Blo13g00540 BCT 104 873 Primary Pumps ATPases(2) AT2G21410 77.0 0.0e+00 1179.9
Blo17g00765 . 3 774 Primary Pumps ATPases(2) AT2G21410 63.2 8.7e-288 986.5
Blo13g01100 BCT 387 1134 Primary Pumps ATPases(2) AT2G21410 59.4 3.9e-264 907.9
Blo14g00151 BCT 377 1156 Primary Pumps ATPases(2) AT2G21410 57.7 2.5e-263 905.2
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT2G21410 74.4 4.6e-164 575.5
Blo13g00540 BCT 104 873 Primary Pumps ATPases(2) AT4G39080 77.5 0.0e+00 1185.6
Blo17g00765 . 3 771 Primary Pumps ATPases(2) AT4G39080 64.1 6.7e-288 986.9
Blo14g00151 BCT 377 1156 Primary Pumps ATPases(2) AT4G39080 58.2 6.3e-262 900.6
Blo13g01100 BCT 387 1134 Primary Pumps ATPases(2) AT4G39080 60.0 1.4e-261 899.4
Blo04g00529 BCT 137 525 Primary Pumps ATPases(2) AT4G39080 76.9 9.6e-170 594.3
Blo02g00650 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.3e-61 230.3
Blo18g00785 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 96.4 1.5e-57 219.2
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT4G34720 89.1 2.6e-54 208.4
Blo15g00664 . 143 245 Primary Pumps ATPases(2) AT4G34720 94.4 2.8e-40 161.8
Blo02g00650 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Blo18g00785 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-52 202.2
Blo17g00753 BCT 1 95 Primary Pumps ATPases(2) AT1G19910 100.0 1.3e-38 156.0
Blo15g00664 . 144 238 Primary Pumps ATPases(2) AT1G19910 98.9 5.0e-38 154.1
Blo02g00650 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Blo18g00785 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 96.4 4.1e-57 217.6
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT4G38920 89.1 7.3e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT4G38920 94.3 3.0e-39 158.3
Blo02g00650 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.4e-67 250.8
Blo18g00785 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.9e-63 239.2
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT1G75630 80.1 1.7e-51 199.5
Blo02g00650 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Blo18g00785 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 6.0e-71 263.8
Blo17g00753 BCT 1 147 Primary Pumps ATPases(2) AT2G16510 89.1 8.7e-54 206.8
Blo15g00664 . 144 245 Primary Pumps ATPases(2) AT2G16510 94.3 3.5e-39 158.3
Blo01g01371 BCT 1 198 Primary Pumps ATPases(2) AT4G32530 77.1 1.7e-78 289.3
Blo12g01087 BCT 2 175 Primary Pumps ATPases(2) AT4G32530 69.6 1.3e-65 246.5
Blo12g01087 BCT 5 175 Primary Pumps ATPases(2) AT2G25610 88.9 1.6e-69 259.6
Blo01g01371 BCT 10 198 Primary Pumps ATPases(2) AT2G25610 75.7 4.7e-66 248.1
Blo11g00688 . 43 350 Primary Pumps ATPases(2) AT3G28710 93.8 2.3e-173 605.1
Blo11g00688 . 43 350 Primary Pumps ATPases(2) AT3G28715 91.2 2.7e-166 581.6
Blo13g01094 BCT 1 1065 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1685.2
Blo14g00140 BCT 1 1064 Primary Pumps ATPases(2) AT1G07810 79.8 0.0e+00 1668.7
Blo17g00892 . 44 451 Primary Pumps ATPases(2) AT1G07810 50.3 1.0e-110 398.7
Blo13g01094 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1322.8
Blo14g00140 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 65.2 0.0e+00 1308.5
Blo17g00892 . 66 451 Primary Pumps ATPases(2) AT4G00900 51.1 5.4e-109 392.9
Blo17g00892 . 9 451 Primary Pumps ATPases(2) AT1G10130 79.5 2.5e-196 682.9
Blo17g00891 . 71 403 Primary Pumps ATPases(2) AT1G10130 79.9 7.3e-156 548.5
Blo17g00890 . 87 219 Primary Pumps ATPases(2) AT1G10130 88.0 9.2e-58 222.6
Blo13g01094 BCT 1 1065 Primary Pumps ATPases(2) AT1G07670 79.7 0.0e+00 1680.6
Blo14g00140 BCT 1 1064 Primary Pumps ATPases(2) AT1G07670 79.5 0.0e+00 1669.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00650 Blo_Chr02 FPKM 44.804012 45.411449 63.230083 62.847343 39.410423 37.865471 42.974075 82.70433 84.036568 96.775841