Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00660 ATGCTCAAGAACGTACAGCCCTTCGTCGCAGGTTACAGATTTGGCTCCGTTGGGGTTGCCCACAATGGTAATTTGGTCAATTACCGTTCCCTTAGAGCGAAGCTTGAAGACAACGGTTCCATCTTTAATACTAGCTCCGACACAGAAGTGGTTCTCCACCTCATTGCAATTTCTAAGCACAGGCCTTTTCTGTTGAGGATTGTTGATGCCTGCGAGCAGCTTGAGGGGGCATACTCGATGGTTTTCATTACAGAGGATAAGTTGGTCGCTGTGCGTGACCCGTTTGGTTTTAGGCCTTTAGTCATGGGTAGGAGAAGCAACGGAGCGATTGTCTTTGCCTCTGAAACTTGTGCGCTAGATTTAATAGAGGCCACATACGAAAGAGAAGTTTACCCTGGTGAGGTTGTGGTGGTCGATAAATCTGGCGTTCAATCCCTTTGTCTAATGGCTCATCCTCAACAAAAGGCCTGCATCTTTGAGCATATATACTTTGCTCTCCCTAACTCGGTTGTTTTCGGCCGATCAGTCTACGTGTCTCGCCGTGCATTTGGTGAAATACTTGCAACGGAAGCCCCAGTTGACTGTGATGTCGTGATTGCAGTTCCAGATTCAGGGGTCGTAGCTGCGCTTGGCTATGCTGCCAAAGCAGGAGTGGCTTTTCAGCAGGGCTTGATTCGATCTCACTATGTGGGCAGAACTTTCATAGAGCCATCTCAGAAGATTAGGGACTTTGGAGTGAAGCTCAAGCTCTCACCAGTCAGGGCCGTTTTGGAAGGTAAGAGGGTCGTGGTTGTAGACGATTCAATTGTGAGAGGAACCACATCTTCTAAAATCGTCAGGTTGATCAAAGAAGCTGGAGCAAAGGAGGTCCATATGAGGATAGCAAGTCCTCCAATTATAGGCTCTTGCTATTATGGAGTAGACACACCAAGCTCAGAGGAGTTGATTTCTAATAGGATGAGTGTTGAGGAGATTAGGGAGTTTATTGGGTCTGATTCACTTGCCTTTCTTCCATTCGATAGCTTGAAGAAGCTTTTAGGCAGTGATTCTCCCAACTATTGCTATGCTTGTTTTTCTGGTCATTACCCAGTTGAACCCAGAGAGGTTAAAGTGAAACGGGTTGGCGATTTTGTAGATGACGGGTTAAATGGAAGCTTAGAATCCATTGATGGTGGCTGGGTCCAAGCAAATCGAAATCAGAAGGTAGAA 1209 46.48 MLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEDNGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAIVFASETCALDLIEATYEREVYPGEVVVVDKSGVQSLCLMAHPQQKACIFEHIYFALPNSVVFGRSVYVSRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFDSLKKLLGSDSPNYCYACFSGHYPVEPREVKVKRVGDFVDDGLNGSLESIDGGWVQANRNQKVE 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17039336 17040544 - BLOR10390 Blo02g00660 56890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00660 403 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 1 141 IPR017932 -
Blo02g00660 403 CDD PRTases_typeI 184 295 IPR000836 -
Blo02g00660 403 PIRSF Pur1 1 376 IPR005854 GO:0004044|GO:0009113
Blo02g00660 403 Pfam Phosphoribosyl transferase domain 181 291 IPR000836 -
Blo02g00660 403 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 363 IPR029055 -
Blo02g00660 403 Pfam Glutamine amidotransferase domain 4 119 IPR017932 -
Blo02g00660 403 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 174 IPR029055 -
Blo02g00660 403 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 1 394 - -
Blo02g00660 403 Gene3D - 181 345 IPR029057 -
Blo02g00660 403 TIGRFAM purF: amidophosphoribosyltransferase 3 363 IPR005854 GO:0004044|GO:0009113
Blo02g00660 403 SUPERFAMILY PRTase-like 157 368 IPR029057 -
Blo02g00660 403 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 1 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00660 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00660 Blo-Chr2:17039336 Blo06g00079 Blo-Chr6:3089352 3.29E-07 dispersed
Blo02g00658 Blo-Chr2:16665004 Blo02g00660 Blo-Chr2:17039336 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo02g00658 . 70 526 PRT Gene Family AT2G16570 81.7 1.9e-217 752.3
Blo02g00660 . 1 395 PRT Gene Family AT2G16570 84.8 2.7e-195 678.7
Blo02g00658 . 71 522 PRT Gene Family AT4G34740 83.4 1.0e-218 756.5
Blo02g00660 . 1 395 PRT Gene Family AT4G34740 85.3 1.4e-196 682.9
Blo02g00658 . 70 520 PRT Gene Family AT4G38880 72.4 2.1e-186 649.0
Blo02g00660 . 1 368 PRT Gene Family AT4G38880 74.3 8.7e-156 547.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo18g00155 . 3 188 PRT Gene Family AT1G71750 61.9 6.5e-64 240.7
Blo03g01488 . 15 469 PRT Gene Family AT1G55810 82.9 3.9e-221 764.2
Blo03g00493 . 170 624 PRT Gene Family AT1G55810 83.6 8.6e-221 763.1
Blo17g00327 . 19 218 PRT Gene Family AT1G55810 59.2 2.2e-59 226.9
Blo17g00329 . 39 153 PRT Gene Family AT1G55810 84.3 1.8e-53 207.2
Blo03g00493 . 221 628 PRT Gene Family AT3G27440 76.0 2.5e-182 635.2
Blo03g01488 . 66 473 PRT Gene Family AT3G27440 73.8 2.0e-179 625.5
Blo17g00329 . 39 153 PRT Gene Family AT3G27440 77.4 3.3e-49 193.0
Blo17g00327 . 81 218 PRT Gene Family AT3G27440 70.3 2.8e-48 189.9
Blo03g01488 . 3 468 PRT Gene Family AT3G27190 74.9 1.3e-206 716.1
Blo03g00493 . 157 623 PRT Gene Family AT3G27190 73.7 1.6e-204 709.1
Blo17g00327 . 1 218 PRT Gene Family AT3G27190 77.2 1.4e-88 323.9
Blo17g00329 . 34 153 PRT Gene Family AT3G27190 84.2 9.3e-56 214.9
Blo07g01168 . 48 286 PRT Gene Family AT3G53900 75.0 1.6e-103 372.9
Blo03g00493 . 155 624 PRT Gene Family AT4G26510 83.9 1.9e-231 798.5
Blo03g01488 . 1 469 PRT Gene Family AT4G26510 83.1 3.1e-229 791.2
Blo17g00327 . 12 218 PRT Gene Family AT4G26510 63.3 1.6e-65 247.3
Blo17g00329 . 39 153 PRT Gene Family AT4G26510 86.1 6.5e-54 208.8
Blo03g01488 . 11 471 PRT Gene Family AT5G40870 74.8 1.9e-205 712.2
Blo03g00493 . 157 626 PRT Gene Family AT5G40870 73.0 2.7e-204 708.4
Blo17g00327 . 1 218 PRT Gene Family AT5G40870 78.4 6.2e-92 335.1
Blo17g00329 . 39 153 PRT Gene Family AT5G40870 87.0 1.6e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00660 Blo_Chr02 FPKM 25.376646 27.933901 63.211349 64.867325 160.992355 168.556686 157.901428 37.056076 37.798347 36.517551