Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00682 ATGGGATCCCTTCTCCCCTTCCAAGACCTTAATCTCCTCCCCGACCCCTCCGTCTCCGCTGCTGGTGCTCCATCTCTCGCCTCCACTTCTCAAGCCGAAGCCATACCCACTCCCATTGACCCACTTATCCACCCCACTCACGCACCCACGACAAATAACTGCAGTTTCAGGTTGAAAACTCCCAAAATCGAACCCAAGCTTGAGCCATTTGACCAAATGTCCCGGACTCTAGAGCCGGCAATGTCTCGGGATCCACTGGAGGACTTCTTTTCCTGCCCTGCTTATGCCAACTACTCTAATCCCGATCTGACCCGCTCATCCTCTTTCTCCGAACCGAAGGACATCTCCATTTCTCTTTCTTCGGACACACCTTCCGGTCACGAAAATGTATACTCCGAGTTCTATCGAATATCTGAACTTTTCAGGTCCGCGTTCGCCAACGGATTGCAGAAATACGGAAACCTCGAGGTTTTGGATCCTTATTCTCGAGCAATTGTACCGGTTCCGCAGGAAAACCAAGTCTCGTCCCTGGCTGTTTCAAAGAAGAATTTTCACCAAAGGTCCGCTGAGCTTGTGAGGGTCACAGATCTCGGTGCAGAGGATCAGAGGTACTTTCGCGATGTGGTGAGACGGACGAGAATGCTTTTTGATTCATTGCGCATTTTGTCAATGACGGAGGATGAGAAATGCAAGGAACCGGGATTCAGGCGGGCGCGAGGTGATTTGAGAGCCTCTTCCATGATGAGGAATCGAGGCCTCTGGCTGAATCGTGATAAACGAATTGTGGGTTCAATCCCTGGAGTCTACATTGGAGATTTGTTCCTATTCAGGATGGAGTTATGCGTAGTTGGTTTGCATGGTCAGCCTCAAGCTGGAATCGACTACGTCCCAGCAAATCATAGCTCTAATGGTGAGCCGATTGCCACAAGCATAATCGTTTCTGGTGGATACGAGGACGATGAGGATGCCGGAGACATGATAATCTACACTGGCCACGGAGGGCAAGACAAGTGTTCAAGGCAATGCACGAACCAGAAGCTAGAGGGTGGAAATCTGGCGCTGGAAAGAAGTATGTATTATGGGATTGAAGTGAGAGTTATACGAGGGATCAAGTACGAGGGCAGCATAACAACTAAGGTTTATGTTTATGACGGTTTATATAAAATTGTTGATTGTTGGTTTGATGTGGGAAAGTCTGGATTTGGTGTTTTCAAGTATAAGCTTTTGCGTATTGATGGGCAAAGTGAGATGGGTAGCGCCATTTTGAGGTTTGCCGAGACTCTTAGGAATAAACCCTTGTCCTTAAGACCCTCTGGCTATTTCAGTCTGGATATTTCCATGAAGAAAGAGAACGTCCCGATTCTCCTTTTCAATGACATTGACAATGATCAGGAACCATTATATTTTGAATATCTAGTCAGGACTGTGTTTCCCCCATTTGCATTTCACCAATCAGGAAGTGCCACTGGATGTGGTTGTGTTTCAGGGTGTGCTAATGATTGCTTTTGCGCTCTTAAAAATGGTGGTGAGCTTGCTTACGATCAAAACGGGTTTCTGCTAAGAGGGAAGCCTGTAATTTTTGAATGTGGGCCATTTTGTCAGTGTCCCCCACAATGCCGAAATCGTGCTACTCAAAGAGGGTTGAAACACAGACTGGAAGTTTTTAGATCAAGGGAAACCGGTTGGGGTGTCAGGTCATTGGATGTGATACATGCTGGTGCTTTTATATGTGAATATACAGGAGTTGTCCTCACCAGGGATCAAGCCCAAGTTCTTTCTATGAACGGCGATAGTTTAATTTATCCGAGTCGTTTTTCAGAACGATGGGCAGAATGGGGGGATATATCTCAAATCGATTCCAATTATGTTCGACCCTCATACCCATCAGTTCCTCCATTGGATTTTGCGATGGATGTGTCTAGATTGAGAAACGTTGCCTGTTATTTGAGCCACAGCACCACACCAAATGTCATGGTACAATTTGTGTTATATGATCATAACAATTTAATGTTCCCACATATTATGGTATTTGCAATGGAAAACGTCCCTCCGATGAGAGAGCTCAGCCTGGACTATGGTGTCGCTGATGAATGCGCTGGAAAACTTGCTATCTGTAACTAA 2121 46.2 MGSLLPFQDLNLLPDPSVSAAGAPSLASTSQAEAIPTPIDPLIHPTHAPTTNNCSFRLKTPKIEPKLEPFDQMSRTLEPAMSRDPLEDFFSCPAYANYSNPDLTRSSSFSEPKDISISLSSDTPSGHENVYSEFYRISELFRSAFANGLQKYGNLEVLDPYSRAIVPVPQENQVSSLAVSKKNFHQRSAELVRVTDLGAEDQRYFRDVVRRTRMLFDSLRILSMTEDEKCKEPGFRRARGDLRASSMMRNRGLWLNRDKRIVGSIPGVYIGDLFLFRMELCVVGLHGQPQAGIDYVPANHSSNGEPIATSIIVSGGYEDDEDAGDMIIYTGHGGQDKCSRQCTNQKLEGGNLALERSMYYGIEVRVIRGIKYEGSITTKVYVYDGLYKIVDCWFDVGKSGFGVFKYKLLRIDGQSEMGSAILRFAETLRNKPLSLRPSGYFSLDISMKKENVPILLFNDIDNDQEPLYFEYLVRTVFPPFAFHQSGSATGCGCVSGCANDCFCALKNGGELAYDQNGFLLRGKPVIFECGPFCQCPPQCRNRATQRGLKHRLEVFRSRETGWGVRSLDVIHAGAFICEYTGVVLTRDQAQVLSMNGDSLIYPSRFSERWAEWGDISQIDSNYVRPSYPSVPPLDFAMDVSRLRNVACYLSHSTTPNVMVQFVLYDHNNLMFPHIMVFAMENVPPMRELSLDYGVADECAGKLAICN 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19776486 19778606 + BLOR10412 Blo02g00682 56912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00682 706 Gene3D SET domain 422 706 IPR046341 -
Blo02g00682 706 SUPERFAMILY SET domain 434 694 IPR046341 -
Blo02g00682 706 MobiDBLite consensus disorder prediction 37 56 - -
Blo02g00682 706 SMART preset_2 442 534 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Blo02g00682 706 SMART G9a_1 258 414 IPR003105 -
Blo02g00682 706 Pfam SET domain 561 693 IPR001214 GO:0005515
Blo02g00682 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH9-LIKE 100 704 - -
Blo02g00682 706 ProSiteProfiles Pre-SET domain profile. 489 547 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Blo02g00682 706 SUPERFAMILY PUA domain-like 244 423 IPR015947 -
Blo02g00682 706 ProSiteProfiles YDG domain profile. 263 410 IPR003105 -
Blo02g00682 706 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 120 706 IPR025794 GO:0016571
Blo02g00682 706 ProSiteProfiles SET domain profile. 550 693 IPR001214 GO:0005515
Blo02g00682 706 Pfam SAD/SRA domain 262 414 IPR003105 -
Blo02g00682 706 Gene3D - 244 421 IPR036987 -
Blo02g00682 706 SMART set_7 550 699 IPR001214 GO:0005515
Blo02g00682 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 100 704 - -
Blo02g00682 706 Pfam Pre-SET motif 445 542 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00682 K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] - csv:101222210 1079.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00682 Blo-Chr2:19776486 Blo12g00659 Blo-Chr12:24912375 1.08E-112 dispersed
Blo02g00682 Blo-Chr2:19776486 Blo11g00079 Blo-Chr11:598416 6.75E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12040 PF02182 SAD_SRA 1.10E-48 CL0178 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00682 Blo_Chr02 FPKM 12.399336 12.500168 13.61326 14.753325 20.287273 23.451649 22.932688 14.061464 15.279261 16.007599