Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00686 ATGATTATCTACACAATGCATCTTCTTAGAAATGGAAAACCTCATGGAGATTCTCATAAGTCATCAAAGATTGAGATATATTGTCTCATTTTGATTTCCCAAGGGAATCTTCATGAAGCCGAGGAATTTTATCTTCAAGTAACACTAGCTGACCCTGAAGACAGTGAGATCCTCTTACAGTCTGCTAAATTAGCGTGGGAGCTCCACCATGACAGGGATAAAGCTGCGGCTTACTTTGAACGAGCAGCTCTATCAGCTCCTCATGATAGCTATGTTCTTGCAGCATATGCTAGTTTTCTCTGGGAAATCGAGGGTGATGGAGAAAAGGATGAAGTTGAAAATCAGATCAACTCATCTTGCAAAGAAGAAAATGGAGGGAGATCTTTGAAACCAGGGATAAAGGTGCCTGATTTCAATCCAGTTAACTGTGCCACTGGTGACTCTGTTGATCAGTATTACAAGAATATGGTTAAGGAAAATCCCAGCAATCCTTTGTTTGTCAGAAAGTACGCTCAATTTCTCTGCCAATTGAAGGGAGACCTTTATGCAGCGGAAGAATACTACACTCGCGCCATAGAGTTGGATCCGAGTAATGGAACCATTTTGTCCGAGCATGCAAAACTGATGTGGGAACTTCATCATGACCATATTGAAGCATCATCATGCTTTCAACGAGCAATACAGGCTAGCCCGGAAGATAGCCATGTCTTGGCAGCGTATGCTTGTTTTCTTTGGGAAACTGGAGAAGAAGAGTAA 756 41.93 MIIYTMHLLRNGKPHGDSHKSSKIEIYCLILISQGNLHEAEEFYLQVTLADPEDSEILLQSAKLAWELHHDRDKAAAYFERAALSAPHDSYVLAAYASFLWEIEGDGEKDEVENQINSSCKEENGGRSLKPGIKVPDFNPVNCATGDSVDQYYKNMVKENPSNPLFVRKYAQFLCQLKGDLYAAEEYYTRAIELDPSNGTILSEHAKLMWELHHDHIEASSCFQRAIQASPEDSHVLAAYACFLWETGEEE 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20106841 20108286 + BLOR10416 Blo02g00686 56916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00686 251 Gene3D Tetratricopeptide repeat domain 17 127 IPR011990 GO:0005515
Blo02g00686 251 Gene3D Tetratricopeptide repeat domain 144 251 IPR011990 GO:0005515
Blo02g00686 251 Pfam Tetratricopeptide repeat 30 54 IPR019734 GO:0005515
Blo02g00686 251 Pfam Tetratricopeptide repeat 176 198 IPR019734 GO:0005515
Blo02g00686 251 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 131 251 - -
Blo02g00686 251 SUPERFAMILY TPR-like 29 103 IPR011990 GO:0005515
Blo02g00686 251 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 32 116 - -
Blo02g00686 251 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 131 251 - -
Blo02g00686 251 SUPERFAMILY TPR-like 151 249 IPR011990 GO:0005515
Blo02g00686 251 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 32 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00686 - - - jre:108990561 256.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00686 Blo-Chr2:20106841 Blo05g00507 Blo-Chr5:8643778 1.47E-24 dispersed
Blo05g00506 Blo-Chr5:8642925 Blo02g00686 Blo-Chr2:20106841 2.27E-07 dispersed
Blo06g00157 Blo-Chr6:6668697 Blo02g00686 Blo-Chr2:20106841 1.75E-06 dispersed
Blo02g00685 Blo-Chr2:20091542 Blo02g00686 Blo-Chr2:20106841 1.59E-24 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g786 . . . . . . . . . . . Cma14g01846 . Car14g01654 . . Cpe03g01546 . . . . . . . . . . . . . . . . Cone7ag0353 . Lsi05g01776 . . Cme06g00446 Blo02g00686 . . . . . . . . . Cmo14g01890 . . . . . . . . . . . . . Cla05g00404 Cam05g0441 Cec05g0448 Cco05g0449 Clacu05g0438 Cmu05g0416 Cre05g0478 . Csa03g01164 Chy06g00426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009424 0 1 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00686 Blo_Chr02 FPKM 0.0 0.8585 2.230182 1.426239 2.92514 2.599178 2.772196 4.553474 5.693035 5.895549