Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00737 ATGAGCTCGCTGGATTCTGTCCCTGAAATCGTGTCTCCAACCAACAACCGATCAACAGTAATGCAAAGGAGGGGAAAACGCGACCAAACGTACCTTGAATCGTCACCGGAAATGCGAACTGCGGAAGTCCCAGCTCCGAGCCCTAATATTAGGGGTAGAGGAACAGGGTTGGAGATGGAAGCTGCTGCTCTTGATGGCATTATTGCTAGGCTGCTAGAAGTGAGAGGAAGGCCAGGAAAACAAGTGCAGCTTTTGGAGTCTGAGATCAGCAAGCTCTGTTTTGTTTCCAAGGCTATCTTCTTGAGGCAGCCTAATCTCCTGGAGCTCGAGGCCCCAATCAACATCTGTGGAGATATTCACGGCCAATATTCAGATCTTCTCCGTCTGTTCGAGTATGGTGGACTACCTCCTTACTCGAACTATCTATTTTTGGGGGACTATGTAGATCGTGGAAAGCAAAGCCTAGAAACAATATGTCTACTCCTAGCATATAAAATAAAATACCCAGAGAATTTCTTCCTTCTGCGAGGAAACCATGAATGTGCATCTGTCAACAAGATCTATGGGTTTTACGATGAATGCAAAAGAAGATACAATGTGAGACTCTGGAAAGTCTTCACAGAGTGTTTCAACTGCATTCCTGTGGCTGCTTTGATAGACGAGAAAATATTGTGCATGCATGGTGGGCTTTCTCCGGACTTGTATGACTTGGATCAGCTGAGGCGGCTGAAGAGACCAACGGACGTGCCGGAAGCGGGCCTGCTGTGCGATCTTCTGTGGTCGGATCCTGCCAAGGAGGTCAAAGGATGGGGCCCGAGCGAGAGGGGTATTTCCTACACCTTTGGTTCGGACAGAGTGGCTGAGTTTTTGAGAAAGCAGGATCTTGATTTAATTTGTAGAGCTCACCAGGTTGTTGAGGATGGATATGAGTTCTTCGCAAACAGAAGGCTTGTAACCATATTTTCTGCGCCGAATTACTGTGGAGAATTCGACAATGCTGGGGCAATGATGAGTGTGGATGAGTCGCTCATGTGTTCTTTCCAAATTTTAAAACCTGCAGATAAGACCCCCAGATTCGGATTTGGCAACTTGACAGATCCCAGAGCCGGCAGTACTAAATCTAAAGTTAAGGTGGATGGCAGCTGGTGGGCTGCATGGGTGAGGCGGTTGGTGTGCAGAACACACCCGTTGGGCACCGCAGAAAAGAATCTAGTTCGCGAGGTGATACTAGGTCGTGATGAGGCTTGTGCGAGCGGGCTGCCGAAGTGCTGGAGAAGGGCAAGTACGCGCATGTGTTGTAAGATGATGGGTTGTGGGGAGGTGGTGGGCCATGTGATTAGGAGGCCGATATTGTTGGATCACGAGCACTTTCAGAAGGAAAAGTGGGCGAGCGAGTGTGCGGGTGCACAGGTGAGCTGGCTTGTGAAGAATGCGCTGGTGGGCGCTGGGCTGCGCGCTGGGTAA 1464 49.59 MSSLDSVPEIVSPTNNRSTVMQRRGKRDQTYLESSPEMRTAEVPAPSPNIRGRGTGLEMEAAALDGIIARLLEVRGRPGKQVQLLESEISKLCFVSKAIFLRQPNLLELEAPINICGDIHGQYSDLLRLFEYGGLPPYSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNKIYGFYDECKRRYNVRLWKVFTECFNCIPVAALIDEKILCMHGGLSPDLYDLDQLRRLKRPTDVPEAGLLCDLLWSDPAKEVKGWGPSERGISYTFGSDRVAEFLRKQDLDLICRAHQVVEDGYEFFANRRLVTIFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPADKTPRFGFGNLTDPRAGSTKSKVKVDGSWWAAWVRRLVCRTHPLGTAEKNLVREVILGRDEACASGLPKCWRRASTRMCCKMMGCGEVVGHVIRRPILLDHEHFQKEKWASECAGAQVSWLVKNALVGAGLRAG 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24013780 24020399 + BLOR10467 Blo02g00737 56967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00737 487 SUPERFAMILY Metallo-dependent phosphatases 76 356 IPR029052 -
Blo02g00737 487 Pfam Calcineurin-like phosphoesterase 113 304 IPR004843 GO:0016787
Blo02g00737 487 MobiDBLite consensus disorder prediction 1 20 - -
Blo02g00737 487 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 59 376 - -
Blo02g00737 487 CDD MPP_PP1_PPKL 64 352 - -
Blo02g00737 487 MobiDBLite consensus disorder prediction 1 54 - -
Blo02g00737 487 Gene3D - 56 362 IPR029052 -
Blo02g00737 487 Pfam Serine-threonine protein phosphatase N-terminal domain 64 110 IPR031675 -
Blo02g00737 487 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 59 376 - -
Blo02g00737 487 ProSitePatterns Serine/threonine specific protein phosphatases signature. 175 180 IPR006186 GO:0016787
Blo02g00737 487 SMART pp2a_7 84 354 IPR006186 GO:0016787
Blo02g00737 487 PRINTS Serine/threonine phosphatase family signature 174 198 IPR006186 GO:0016787
Blo02g00737 487 PRINTS Serine/threonine phosphatase family signature 141 168 IPR006186 GO:0016787
Blo02g00737 487 PRINTS Serine/threonine phosphatase family signature 208 234 IPR006186 GO:0016787
Blo02g00737 487 PRINTS Serine/threonine phosphatase family signature 237 264 IPR006186 GO:0016787
Blo02g00737 487 PRINTS Serine/threonine phosphatase family signature 316 332 IPR006186 GO:0016787
Blo02g00737 487 PRINTS Serine/threonine phosphatase family signature 294 314 IPR006186 GO:0016787
Blo02g00737 487 PRINTS Serine/threonine phosphatase family signature 112 139 IPR006186 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00737 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - ini:109175833 573.548
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00737 Blo07g00257 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00737 Blo-Chr2:24013780 Blo03g01153 Blo-Chr3:37930435 0 dispersed
Blo14g00247 Blo-Chr14:2230541 Blo02g00737 Blo-Chr2:24013780 4.62E-78 dispersed
Blo15g00595 Blo-Chr15:13586194 Blo02g00737 Blo-Chr2:24013780 2.99E-50 transposed
Blo02g00737 Blo-Chr2:24013780 Blo07g00257 Blo-Chr7:3132209 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00737 Blo_Chr02 FPKM 22.671329 24.824408 5.454267 5.331269 52.285862 52.85508 54.4757 0.730843 0.69351 0.413723