Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00768 ATGCTATCAAATAGGCTAGGGCGGGAATTCGGCAGCTGTAGGATGGCATGCCTTCAGAGATCCTCTCCACCTTTGCAGCAAATCCTGCTCAAACTCTGTCGTTCAGAAAAGCCAGTAGAAATTGACCACCACTTGCATGAATTTGGGCTTGTGGAATATCGCGTCCAGTCTTCAGCATCTGATCCGCAACACACCTACTTGTCGATTTCGACCCCACTGCTCTCTCATGGAGTTTTACTCCCGCAGATGCTTTCATGTTTAACGGCGGACATGGAGAAGCGAGTAAGCTCCGATATTGTGGATGTCATGGAGCCTAGCAGGGAAGGATATCAGCTCACTCTAAGGCTTGATTTTACTAAAATTCCACCAGGAAATGACACATGGATAATTGCGGAGATTTCTGCTTTGAAAGCAGTAATACTAACTTCCCAGCTTAAACATATTTTGACAATTTCCGAGTCAGATATGTCCCAAGGGATGTACAAGCCGATCAAACTCGTACCTCATCCAAGAGAGCCGTTTTTTGTCATCAAACAGCCACAAAAGCTGATGGCAATCTTTCCAATGCGGTTCAAAGAAAACACGGATGTGCTTATAGCAACAGCGTTCTTCCTGGAATTAATGGACATGGGGACTTGTGCGAAATGGTCAAAAGCACCTCCCTGCGCTTGGTCTCCTATTCCACCTCCAGAACTGATGGGAGAACCAATTGAAGATTTGAGCACTAATGGAGGATTTGTCTCTCTTGACATTTCATGGCGCCATCTCAAAGGTGAAAAACTGGAGAAGACTCTGTGGAGTTTGCTTAACTTCCATGCTTATGTCAAACGTCATGTAAAGACAACCAGAGGTTTCGTCCAAAGAATGATGAGAAACAGATTAGAATGCTTAGTTGAGGTCCTGCAGAAGAAGGGAAGTAGAGAACAAAATGAAAATATTGCAAAAGCCCAAGAGGGTGCATTATTCTTTGGTATTACTGGTTATCTTCCAAATTTTGCACTGATTGGAACTAGAAAGATTTCCATTTTCAACATCCTCATCGGAGAAATTGTTTGTCTGAAAATTGGAGATCAGATTCCGGCCGATGGGTTATTCGTCTACGGTTATGGTTTGCAAGTTGACGAATCGAGTATGACTGGAGAAAGCGATCATGTGGAAGTAAATCGAACTGAGAATCCATTTTTGATTCAACGCAGAACAGTTCGCCAAATCACACAGAGCCGTTCGCACTTCACTGGGACAGTCCACCAGGGGTGGCTGGAGGGCGGGCTTGCCGAGCCAGCCCGCGAGCCCTGCTCGCTAGCCCATATTTTCAGGCTCGGCTAG 1326 45.4 MLSNRLGREFGSCRMACLQRSSPPLQQILLKLCRSEKPVEIDHHLHEFGLVEYRVQSSASDPQHTYLSISTPLLSHGVLLPQMLSCLTADMEKRVSSDIVDVMEPSREGYQLTLRLDFTKIPPGNDTWIIAEISALKAVILTSQLKHILTISESDMSQGMYKPIKLVPHPREPFFVIKQPQKLMAIFPMRFKENTDVLIATAFFLELMDMGTCAKWSKAPPCAWSPIPPPELMGEPIEDLSTNGGFVSLDISWRHLKGEKLEKTLWSLLNFHAYVKRHVKTTRGFVQRMMRNRLECLVEVLQKKGSREQNENIAKAQEGALFFGITGYLPNFALIGTRKISIFNILIGEIVCLKIGDQIPADGLFVYGYGLQVDESSMTGESDHVEVNRTENPFLIQRRTVRQITQSRSHFTGTVHQGWLEGGLAEPAREPCSLAHIFRLG 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25797009 25803270 + BLOR10498 Blo02g00768 56998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00768 441 Pfam Arp2/3 complex, 34 kD subunit p34-Arc 102 303 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
Blo02g00768 441 SUPERFAMILY Calcium ATPase, transduction domain A 338 389 IPR008250 -
Blo02g00768 441 Pfam E1-E2 ATPase 338 392 - -
Blo02g00768 441 SUPERFAMILY Arp2/3 complex subunits 157 304 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Blo02g00768 441 Gene3D - 15 147 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Blo02g00768 441 Gene3D - 336 418 - -
Blo02g00768 441 PANTHER ARP2/3 COMPLEX 34 KDA SUBUNIT 15 319 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
Blo02g00768 441 Gene3D - 148 323 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Blo02g00768 441 PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2B 15 319 - -
Blo02g00768 441 SUPERFAMILY Arp2/3 complex subunits 15 139 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00768 K05758 ARPC2; actin related protein 2/3 complex, subunit 2 - csin:114269028 409.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00768 Blo-Chr2:25797009 Blo12g00345 Blo-Chr12:19397056 6.21E-26 dispersed
Blo02g00768 Blo-Chr2:25797009 Blo12g00987 Blo-Chr12:27907713 3.81E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g768 . . . . . Bpe14g01274 . . . . . Cma14g01837 . Car14g01645 . . . Bhi01g00686 Tan10g0647 . . Hepe05g1684 . Lcy11g1697 . . . . . . . . . Cone7ag0343 . Lsi05g01762 . . Cme06g00459 Blo02g00768 . . Bda13g00044 . . Bma02g00755 . . . Cmo14g01878 . . . . . . . . . . . . . Cla05g00417 Cam05g0455 Cec05g0462 Cco05g0464 Clacu05g0452 Cmu05g0430 Cre05g0491 . Csa03g01179 Chy06g00441 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009192 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00768 Blo_Chr02 FPKM 0.0 0.0 0.0 0.0 1.130179 0.292696 0.774423 0.277134 0.313151 0.0