Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00788 ATGGTGATTCCACTCTTAAACCGCATTCACTTCCATACCCGAATACCCACAATCAAATGCATGCCCCCTCCGCCATTCGCTTTCTTTTTCTCTTCTGTACACACTGATGAAACTCCATCAACATCAAAACCATCAATCTCAACCGTCGTTTTAGCCCTCACCCAACATCGTTCGAAATCTCGCTGGAGGTACCTCCGGCATCTTTGCTCCAACGGATTCGAACCCGACGAGTTTTCGCAAATTACCCTTCAACTTAGGAACAATCCTCATCTTGCACTCAGTTTCTTCCGCTGGACACAGTGCAAGTCTCTTTGTCGCCATAACCTTTCCTCTTACTCGACCGTCATTCATATCCTTGCCCGGGGCCGGCTCAGATTTCACGCTGTTAATCTTATTCAGGCGGCTCTTCAGGTAGCGGCACTGGAAAATGATGATTCTGAAAGTGGGCTTATTTCGAACACACTGAAGGTGTTTGAGGCCCTCGTCAAAACTTACAGGCAATGTGATTCTGCTCCGTTTGTCTTTGATTTGCTTATAAAAGCTCTTCTAGACTCGAAAAAGATCGACGCATCAATTCAAGTTGTAAGAATGTTAAGGTCTCGTGGGATTTCCGCAAAAGTTGATACTTTGAATTCATTGATTTTGTTGGTTTCTCAGTGTCAAGGTTCAAATGCAGGTTACGGTGTGTATGGAGAGTTTTTTGGTGAAATCAGAGAGAGGAATATTAAATGGACTCTGGAAGTTAATCCAAATGTGCATACTTTTAATGTATTAATGGTTAGCTTTTACCAAGATGGTTTGGTTGAAAAGGTGGAGGAGATTTGGGAACAATTTGAGAAATCAAAGTTGGTTCCAAATAAATATAGCTTTAGCATTTGGATGGCAGCACTTTGTGAGGCAAAAAAAATGGATGAAGTGGAGAAGTTGTGGGAGGAAATGAAACATAACAAAGTGACGCCTGATGTTGTCTCTTACAACACTGTAATTGGTGGGTATTGCAAAATTGGAGATCTTAAAATGGCTGATGAGTTTTTCAAAGAAATGGAGTTGATTGGAATCGACAGGACTTGCACCACCTATGAACATCTTGTATGTGGCTATTCTATAATAGGAAATGTCGATTCTGCAGTGCTCGTTTATAAAGATATGCGCAGAAAGCATTTTAGGCCCAGTGCTTTTGTGACGGAAGAGTTGATAAGAGCATTGTTGGCTAAGCATAGAATTTCGGAATCGGTAGAGATTTTGAGGAATGAAATGGCAGATGGTAATATTTCTGCAACTGGGAAGAGTTATGAGCTTTTAATAGAAGGAATGTGTGAAGAGGGGAAAATCGAAGAAGCTTTCAAACTTCAAGCAGAGATGGTGGGGAAAGGCTTTAAATCAAATGTTGAGATCTACAATGCTTTCATCAATGGCCATATGAAACGAGGAAACAAGGAAATGGCAGAAAGGTTGAGAAATGAAATGCTTGAGATTCACTTCAATGAAAAATAA 1494 40.83 MVIPLLNRIHFHTRIPTIKCMPPPPFAFFFSSVHTDETPSTSKPSISTVVLALTQHRSKSRWRYLRHLCSNGFEPDEFSQITLQLRNNPHLALSFFRWTQCKSLCRHNLSSYSTVIHILARGRLRFHAVNLIQAALQVAALENDDSESGLISNTLKVFEALVKTYRQCDSAPFVFDLLIKALLDSKKIDASIQVVRMLRSRGISAKVDTLNSLILLVSQCQGSNAGYGVYGEFFGEIRERNIKWTLEVNPNVHTFNVLMVSFYQDGLVEKVEEIWEQFEKSKLVPNKYSFSIWMAALCEAKKMDEVEKLWEEMKHNKVTPDVVSYNTVIGGYCKIGDLKMADEFFKEMELIGIDRTCTTYEHLVCGYSIIGNVDSAVLVYKDMRRKHFRPSAFVTEELIRALLAKHRISESVEILRNEMADGNISATGKSYELLIEGMCEEGKIEEAFKLQAEMVGKGFKSNVEIYNAFINGHMKRGNKEMAERLRNEMLEIHFNEK 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26726658 26728151 - BLOR10518 Blo02g00788 57018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00788 497 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 28 494 - -
Blo02g00788 497 Pfam PPR repeat family 250 298 IPR002885 -
Blo02g00788 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Blo02g00788 497 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 28 494 - -
Blo02g00788 497 Pfam PPR repeat 318 349 IPR002885 -
Blo02g00788 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Blo02g00788 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Blo02g00788 497 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Blo02g00788 497 TIGRFAM PPR: pentatricopeptide repeat domain 359 391 IPR002885 -
Blo02g00788 497 TIGRFAM PPR: pentatricopeptide repeat domain 323 349 IPR002885 -
Blo02g00788 497 TIGRFAM PPR: pentatricopeptide repeat domain 430 462 IPR002885 -
Blo02g00788 497 TIGRFAM PPR: pentatricopeptide repeat domain 465 491 IPR002885 -
Blo02g00788 497 TIGRFAM PPR: pentatricopeptide repeat domain 288 322 IPR002885 -
Blo02g00788 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Blo02g00788 497 Gene3D Tetratricopeptide repeat domain 233 385 IPR011990 GO:0005515
Blo02g00788 497 Pfam PPR repeat 430 459 IPR002885 -
Blo02g00788 497 Pfam PPR repeat 465 491 IPR002885 -
Blo02g00788 497 Pfam PPR repeat 359 387 IPR002885 -
Blo02g00788 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Blo02g00788 497 Gene3D Tetratricopeptide repeat domain 386 495 IPR011990 GO:0005515
Blo02g00788 497 Gene3D Tetratricopeptide repeat domain 79 232 IPR011990 GO:0005515
Blo02g00788 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00788 - - - bhj:120088417 568.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00788 Blo-Chr2:26726658 Blo01g00781 Blo-Chr1:11354955 2.45E-08 dispersed
Blo02g00788 Blo-Chr2:26726658 Blo04g00498 Blo-Chr4:4139283 7.96E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g536 Blo02g00788 . . Bda08g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1132 Cone10ag1142 Lsi10g00648 . . . . . . . . . . . . . . . . . . . . Bhi10g02041 . . . . . . . . . . . . . . . . Cme11g00226
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012888 2 1 1 1 0 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00788 Blo_Chr02 FPKM 25.046305 26.039789 30.322569 31.42959 28.314289 27.526371 28.590248 39.744297 38.783855 41.793186