Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00807 ATGGCAAGCGGAAGTGGGCCACCTAATAAGAAGGCTACTCCCAACAGACACTACTATGACAACCTCACAGCTAACGCTGCAGATGCCCAGACCCATAGCAAAGAACAGTTCAAGCCCAACAACACAAGCCCAAGGCCCACCGAACATGACATTCTATCCCAGGAGTATCGAGACCTCCTTGACTACTCTATTGGGCCCATGGACCTCGACGAAACAAGCTGGATCCAAGATCAGATGTACAGAATCCGCCAGCAAGCTATCCAAAAAGCTATCACTGCCCTACAAGAGTTGGAAACCATCATAACTTTACGAACCATATACTGCCAGATCAACTCTACCAAGGACAATTGTGAGCCTACCATGATGGATTCTTCCTGTGTGACCTTCAAACCCAAAACCCATTTTCCTCAGAAAAGCAAGAGTGATATGAGAGAAGTATATAATGGGTTTTGGGGACGAAGAGTAAGAGAAAGTAAAAACAATAATCAGTTAGCAGAAAGTTTGAGATCGAAGAAGAAGGTTGCTTACGCCATTCTCACATCGAACAACACAGCTGTTACCATAAAAGCGCCACCTTTACAAAGACAGAAAGTAAATCCTAAAAATGTTGCTTCTATAATATTGGGAGGAGGGGCAGGGGCTCAGCTTTTTCCACTCACCAGAAGAACAGCTACACCTGCTGTTCCAGTTGGAGGTTGCTACAGGCTTATAGATATTCCAATGAGCAACTCTATCAACAGTGGGATAAACAAGGTTTTTGTGCTTACTCAGTTCAACTCTGCTCATCTGAATCGCCATATTTCGCGCACTTACTTCGGAAATGGTATTAGTTTTGGGGATGGATTCGTAGAGTTGTGGATGGAACAGGTTTTAGCAGCCACTCAAACACCTGGGGAAGCAGGAATGAATTGGTTCCAAGGAACAGCAGATGCTGTGAGAAAATTTATTTGGGTGTTTGAGGATGCGAAGAACAGAAATGTGGAGAATATCCTAATCTTGTCAGGGGATCACCTTTATAGGATGGATTATATGGACTTTGTGCAGAACCATGTTGATAGGAATGCTGATATTTCGGTATCATGTGTAGCAGTTGGCGAAAGCCGTGCCTCCGACTATGGTTTGGCGAAAATAGATGGAAGAGGTCGAATCGTTCAGTTCGCAGAAAAGCCGAAGGGTGCTAATTTGAAATCAATGCGTGTCGATACGACTCTGCTTGGTTTATCTCAACAAGACTCCATGAAATCGCCATATATAGCATCCATGGGAGTATATGTTTTCAAAACAGATATACTGCTTAAGCTTCTTAAGTGGAGATACCCCACATCCAACGACTTCGGATCTGAAATCATTCCCGCTGCTGTGAAAGAACATGACGTCCGAGCATATATCTTCGGAGACTACTGGGAGGATATTGGAACAATTAAGTCTTTCTTTGATGCAAACCTTGCTCTTACTGAAGAGGTTCCAAAATTTGAATTTTACGATCCAAAAACACCATTTTATACGTCTCCTGGGTTTTTACCGCCAACTAAGATTGATAAATGCAGGATTGTTGATGCAATCATCTCGCATGGATGCTTTTTGCGAGAATGTAGTGTCCATCATTCCATCATCGGTGAACGGTCTCGACTCGACCATGGAGTCAAGATTAAGGATACTGTGATGATGGGTGCAGATTATTACCAAACTGAACCTGAAATTGCAGCTCTTCTGGCTGAAGAAAAGGTTCCAATTGGGATAGGAAGAAACACAAAGATAAGCAACTGTATCATCGACAAGAATGCAAAAATAGGGAAAGATGTAGTGCTTATGAACAAAGATAACGTTCAAGAAGCCGACAGGCCGGAAGACGGATTTTACATTCGTTCCGGAATCACCGTTATATTGGAAAAGGCAAATGAAGTAAACAAAGAGGAGCAACAAATTGAAAGAGGTACACAAGAGGAAAAGTTTGAAATTCGAGATGTAAAGAGTGCAAGGGGCGATGAATTACCACCTCTTGATGATTGCCATGATATGGAAGTGGAAGATTCAATAAAAGAAGATTTGTTGGACACAAAGCAAGTTTTTAATGTGCAAGTCGAGGAAGCTAATAACGATCAAGACGAGATTACCAAGGATGTACACAATTATGCCAAATCAAAAGTGAGAGAAGCAAAATATGATTGTGGAGTAGTTGAGAAAGATTTGGAAGTTGAAGAAATATTTGAAAAAGAAAAAGGCAAAGATGAAAAAGGTGACAAAAGAGCCATAGAGAGAAAAGTCAAAATTCAAGTAAGTGAAAAAGGCAATGAGGAAGAAAAGAATTTGGAGGAAGAGAGAACAAAATCCGAGGGTGAAAAGGAAAAAAAGATAGTGGGAGAGGAGGTAAAATCTAAGGGAGAAAAGGAAAGATCTGATTGGGCGAGACTGCGATCCGGGGAGGAGAATCGGGCGAGAAATGAAATGGGTTACACGAAGAAGAAGAGACAGAGAGTGAGTGCTCTTCGAGGAGTCTGCCATAACTTCGGCTTCTCTCCGGCGAGAGCTCTTAGAAACAAGGTTTCCCAGTTGTTTGATTCTGGGAAGACAAGGTTTCTGTTCTTACTGAGAAAATCGACAGAGGAGAGCAGCGACTGCAGAGGAGAGAAGCAACCAATTGGAGCAGAGCAGCAACTAGAGCAGAGCAGCAACTGGAGCAGATTTGAGTGA 2691 42.47 MASGSGPPNKKATPNRHYYDNLTANAADAQTHSKEQFKPNNTSPRPTEHDILSQEYRDLLDYSIGPMDLDETSWIQDQMYRIRQQAIQKAITALQELETIITLRTIYCQINSTKDNCEPTMMDSSCVTFKPKTHFPQKSKSDMREVYNGFWGRRVRESKNNNQLAESLRSKKKVAYAILTSNNTAVTIKAPPLQRQKVNPKNVASIILGGGAGAQLFPLTRRTATPAVPVGGCYRLIDIPMSNSINSGINKVFVLTQFNSAHLNRHISRTYFGNGISFGDGFVELWMEQVLAATQTPGEAGMNWFQGTADAVRKFIWVFEDAKNRNVENILILSGDHLYRMDYMDFVQNHVDRNADISVSCVAVGESRASDYGLAKIDGRGRIVQFAEKPKGANLKSMRVDTTLLGLSQQDSMKSPYIASMGVYVFKTDILLKLLKWRYPTSNDFGSEIIPAAVKEHDVRAYIFGDYWEDIGTIKSFFDANLALTEEVPKFEFYDPKTPFYTSPGFLPPTKIDKCRIVDAIISHGCFLRECSVHHSIIGERSRLDHGVKIKDTVMMGADYYQTEPEIAALLAEEKVPIGIGRNTKISNCIIDKNAKIGKDVVLMNKDNVQEADRPEDGFYIRSGITVILEKANEVNKEEQQIERGTQEEKFEIRDVKSARGDELPPLDDCHDMEVEDSIKEDLLDTKQVFNVQVEEANNDQDEITKDVHNYAKSKVREAKYDCGVVEKDLEVEEIFEKEKGKDEKGDKRAIERKVKIQVSEKGNEEEKNLEEERTKSEGEKEKKIVGEEVKSKGEKERSDWARLRSGEENRARNEMGYTKKKRQRVSALRGVCHNFGFSPARALRNKVSQLFDSGKTRFLFLLRKSTEESSDCRGEKQPIGAEQQLEQSSNWSRFE 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28108614 28123332 - BLOR10537 Blo02g00807 57037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00807 896 Coils Coil 628 648 - -
Blo02g00807 896 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 419 429 IPR005836 GO:0005978|GO:0008878
Blo02g00807 896 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 209 228 IPR005836 GO:0005978|GO:0008878
Blo02g00807 896 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 204 604 IPR011831 GO:0005978|GO:0008878
Blo02g00807 896 CDD LbH_G1P_AT_C 508 632 - -
Blo02g00807 896 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 189 505 IPR029044 -
Blo02g00807 896 Coils Coil 760 780 - -
Blo02g00807 896 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 122 633 - -
Blo02g00807 896 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 304 312 IPR005836 GO:0005978|GO:0008878
Blo02g00807 896 Gene3D Hexapeptide repeat proteins 506 636 - -
Blo02g00807 896 SUPERFAMILY Trimeric LpxA-like enzymes 503 631 IPR011004 -
Blo02g00807 896 Coils Coil 680 700 - -
Blo02g00807 896 MobiDBLite consensus disorder prediction 25 48 - -
Blo02g00807 896 MobiDBLite consensus disorder prediction 760 824 - -
Blo02g00807 896 CDD ADP_Glucose_PP 206 471 - -
Blo02g00807 896 MobiDBLite consensus disorder prediction 867 896 - -
Blo02g00807 896 Pfam Nucleotidyl transferase 205 486 IPR005835 GO:0009058|GO:0016779
Blo02g00807 896 MobiDBLite consensus disorder prediction 882 896 - -
Blo02g00807 896 MobiDBLite consensus disorder prediction 760 822 - -
Blo02g00807 896 SUPERFAMILY Nucleotide-diphospho-sugar transferases 201 602 IPR029044 -
Blo02g00807 896 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 122 633 IPR011831 GO:0005978|GO:0008878
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00807 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - qsu:112024621 824.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00807 Blo04g00618 CCT
Blo02g00807 Blo04g00618 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01573 Blo-Chr1:55460637 Blo02g00807 Blo-Chr2:28108614 0 dispersed
Blo02g00807 Blo-Chr2:28108614 Blo04g00618 Blo-Chr4:5390090 8.54E-155 dispersed
Blo13g00977 Blo-Chr13:32192801 Blo02g00807 Blo-Chr2:28108614 3.61E-18 dispersed
Blo14g00794 Blo-Chr14:25672626 Blo02g00807 Blo-Chr2:28108614 1.62E-18 dispersed
Blo14g00800 Blo-Chr14:26222270 Blo02g00807 Blo-Chr2:28108614 1.09E-13 dispersed
Blo16g00417 Blo-Chr16:16400508 Blo02g00807 Blo-Chr2:28108614 6.11E-36 dispersed
Blo02g00807 Blo-Chr2:28108614 Blo12g00903 Blo-Chr12:27229479 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g359 Blo02g00807 . . . . . . . Cmo19g00849 . Cma02g00387 Cma20g00840 . Car20g00727 Sed05g2098 . Cpe15g00669 Bhi05g01515 Tan02g0519 Cmetu01g0280 Lac12g0419 Hepe02g0330 . . Cla02g00313 Cam02g0320 Cec02g0321 Cco02g0323 Clacu02g0312 Cmu02g0311 Cre02g0643 Cone12ag1278 Cone8ag1355 . Cone10ag0975 Lsi10g00383 Csa07g00231 Chy11g00368 . Blo04g00618 . . Bda14g00659 Bpe15g00765 . . . Sed01g0294 Cmo02g00394 Cmo20g00850 . Cma19g00833 . Car19g00646 Cpe16g00250 Cpe05g01269 Bhi10g01989 Tan05g1287 Cmetu11g1343 . Hepe08g1004 . . . . . . . . . Lsi11g01326 Csa02g01275 Chy01g00549 Cme11g00128
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001022 2 5 3 5 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 2 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00807 Blo_Chr02 FPKM 24.54224 23.089777 3.555283 4.308799 12.274693 11.784587 11.535635 1.541572 1.783393 1.064009