Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00809 ATGGCGAAAACACGATCGAAATCTAATGAAGAAGCATTGAAGCGTATGGAAGGAGAGTTGCAGAGTATTGACTCTTCTTTCACTGCTGTTTTTTCTCGATTAGAAGATTCAGATAAACAATTTCAATCCTTGGCTGCTCGCCAAGATACACTGGAATCTACAGTTCAAGGAATGGCGAAAGATATTGCGGTTAAACATGAAGTTGTTATGGCCGCTTTGGCACAATTGCTTTCAAATAGGTCAGATGCGTCAACCGGTCAGCCTCAAAAAGGGGAATTTGTCTTCATGTCAATCGTTCTTCCTTCACAAAACGATGCGTTTAGTCATCTGCCTTCACAGATTCGACAACCTGTCTTCTCCTCCAGGCTTCTCTCCAACTTTGGCATCTCCAGCTACTGCGAATCTTCTTCTCCTCATATTGTCTCTCCTTCTACGCCTCTTCCAGTTGCTTTTGTATGCGTTGGCATGCTATGCAATGCACCATTTATGCATTTATGCACATTCGTTTCAGGTGATTCGCTGGTGGTTTCTAATGGCAATATCAACACATACCCTGATCCACGCAGGACCTATCAAGTTGTTGTGGCTGCCACACCAAATATGGGCATTGGGAAAAATGGGGTATTACCTTGGAGCATAGCTTCTGCTTTAGAACTTTTTGCTGCTTCTCCGTACTGTTTGTCAATTGAGAAAGTGTTTGTTATAGGTGGAGGTGAGATATTAAGGGAGGCTTTGAATGCACCTGAATGTGATGCTATCCACATTACGGAAATTGAGACAAACATCGAATGTGATACCTTTATACTGGAGATTGATATGTCTGTTTTCCAACCATGGTGCTCATCTTTTCCTACGGTGGAGAATAACATTCGTTCTTGCTTTACAACTTATGTCCGAGTGAGGAGTTCTGCAGTTGATTCCCCTTGTCAGAACGAGGAAATGATCTCAGACAATAGGTTAGATTCTGATAAATTTGAGGTAAAGAAGTTCTCTTTCCTACCAAAGAGCATATTTGAGAAACACGAGGAGCACTTGTATCTAAGACTCGTCCAAGACATAATTTCTGATGGCAATCTTAAGGATGATAGAACAGGAACTGGTACATTGTCCAAATTTGGCTGCCAGATGCGATTCAACTTTCGTAAAACTTTCCCATTGCTTACAACTAAGGCATTGTTTTGGCGAGGAGTTGTTGAAGAGCTTTTGTGGTTCATTAGTGGTTCAACCAATGCCAAGGTCCTACAGGATAAAGGCATTCACATATGGGATGGTAATGCATCCAGAGATATTGGTTTGAGAGACAGGGAGGAGGGTGAATTGGGACCTGTATATGGATTTCAGTGGAGACACTTTGGAGCTAGGTATTCTGACATGCATGCTGACTATTCTGGTCAAGGATTTGATCAATTGCTTGATGTTATTAGCAAAGTAAAACATAATCCAGATGGCTGCCGAATTATACTCTCTGCATGGAATCCTTCTGATCTAAAATTGATGGCACTTCCACCTTGTCATATGTTTGCACAGTTTTACGTAGCAAACGGGGAGTTGTCATGTCAAATGTATCAGCGATCTGCTGACTTGGGCCTGGGTGTTCCCTTTAACATTGCATCTTATGCACTGCTTACTTGCATGATTGCTCATGTTTGTGATGTCGTTCCGGGTGATTTTATTCATGTCATAGGCGATGCTCATGTTTATCGAACACATGTGAGGCCTCTGCAGGAACAGCTCCAGAAACTGCCTAAGCCATTCCCAATTCTGAAGATAAATCCTGAGAAAAGGAGCATAGATTCTTTTGTGGCAGCCGATTTCAGTCTCATTGGTTATGATCCTCAACAGAAGATAAATATGAAAATGACCGTATAG 1869 41.95 MAKTRSKSNEEALKRMEGELQSIDSSFTAVFSRLEDSDKQFQSLAARQDTLESTVQGMAKDIAVKHEVVMAALAQLLSNRSDASTGQPQKGEFVFMSIVLPSQNDAFSHLPSQIRQPVFSSRLLSNFGISSYCESSSPHIVSPSTPLPVAFVCVGMLCNAPFMHLCTFVSGDSLVVSNGNINTYPDPRRTYQVVVAATPNMGIGKNGVLPWSIASALELFAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIETNIECDTFILEIDMSVFQPWCSSFPTVENNIRSCFTTYVRVRSSAVDSPCQNEEMISDNRLDSDKFEVKKFSFLPKSIFEKHEEHLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRFNFRKTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQDKGIHIWDGNASRDIGLRDREEGELGPVYGFQWRHFGARYSDMHADYSGQGFDQLLDVISKVKHNPDGCRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADLGLGVPFNIASYALLTCMIAHVCDVVPGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKRSIDSFVAADFSLIGYDPQQKINMKMTV 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28313665 28322290 - BLOR10539 Blo02g00809 57039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00809 622 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 335 622 IPR036926 -
Blo02g00809 622 CDD TS_Pyrimidine_HMase 346 575 IPR023451 -
Blo02g00809 622 Hamap Thymidylate synthase [thyA]. 343 622 IPR000398 GO:0004799|GO:0006231
Blo02g00809 622 PANTHER THYMIDYLATE SYNTHASE 1 212 622 IPR045097 GO:0016741
Blo02g00809 622 PANTHER THYMIDYLATE SYNTHASE 1 170 213 IPR045097 GO:0016741
Blo02g00809 622 Gene3D Dihydrofolate Reductase, subunit A 173 218 IPR024072 -
Blo02g00809 622 PRINTS Thymidylate synthase family signature 517 543 IPR000398 GO:0004799|GO:0006231
Blo02g00809 622 PRINTS Thymidylate synthase family signature 499 514 IPR000398 GO:0004799|GO:0006231
Blo02g00809 622 PRINTS Thymidylate synthase family signature 473 492 IPR000398 GO:0004799|GO:0006231
Blo02g00809 622 PRINTS Thymidylate synthase family signature 384 405 IPR000398 GO:0004799|GO:0006231
Blo02g00809 622 PRINTS Thymidylate synthase family signature 555 572 IPR000398 GO:0004799|GO:0006231
Blo02g00809 622 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 170 213 - -
Blo02g00809 622 CDD DHFR 194 298 IPR001796 GO:0004146|GO:0046654
Blo02g00809 622 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 324 622 IPR036926 -
Blo02g00809 622 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 212 622 - -
Blo02g00809 622 TIGRFAM thym_sym: thymidylate synthase 435 621 IPR000398 GO:0004799|GO:0006231
Blo02g00809 622 Pfam Dihydrofolate reductase 230 299 IPR001796 GO:0004146|GO:0046654
Blo02g00809 622 ProSitePatterns Thymidylate synthase active site. 485 512 IPR020940 GO:0004799|GO:0006231
Blo02g00809 622 SUPERFAMILY Dihydrofolate reductase-like 184 299 IPR024072 -
Blo02g00809 622 Pfam Thymidylate synthase 346 622 IPR023451 -
Blo02g00809 622 Gene3D Dihydrofolate Reductase, subunit A 219 304 IPR024072 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00809 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - cit:112495493 726.472
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00809 Blo15g00707 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00809 Blo-Chr2:28313665 Blo03g00052 Blo-Chr3:1880023 0 dispersed
Blo01g00182 Blo-Chr1:2464581 Blo02g00809 Blo-Chr2:28313665 1.57E-48 transposed
Blo01g00910 Blo-Chr1:19808924 Blo02g00809 Blo-Chr2:28313665 2.71E-07 transposed
Blo08g00097 Blo-Chr8:978023 Blo02g00809 Blo-Chr2:28313665 1.85E-15 transposed
Blo15g00707 Blo-Chr15:22540291 Blo02g00809 Blo-Chr2:28313665 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00809 Blo_Chr02 FPKM 3.536941 3.907679 5.866773 5.978857 4.17761 3.349483 5.017698 5.45675 3.954813 6.11969