Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00813 ATGAGCGCGGCGAAGAGGGAGCCACTACTAAGCACTCCGCCTCAACTGTTTTTGTTTCCAACCTACCCTATTCCTTTACCAACAAACTGGTTGAAGAAACATTTGGAGATGTCGGACCTGTTAGACGGGCCTTCATGGTTACAGAAAAGGGATCAACTAAGCATCGTGGTTTTGGTTTCGTCCAGTTGTAAGTTCTCTGCTGTTGTTGCCCCTTCTGTTTCTTTTACAGTTGGATTTTTTTCTTATGTATTACCTTTGAGTGCTATCAAAGAAGATGCAAATCGTGCTATAGAGTTGAAAAATGGGTCATCTGTTGAAGGCCGCAAAATTGCAGTCAAACATGCAATGCAGCGTGCTCCTCTTGAGCAGCGAAGATCGAAGGAGAAACAAGTCATTCCCTCGAAGGCAAGGAATGAAAAGGATGGTGAAACCTCCAAGTCAGGAAAGGATGCTTCAAATTTGGAAGAACAAGTTAAACTTGGGAAGAGTACAAAGGCATCTCCAGTTTCTCGTGATTTAGCAAATAAAATAGGTTCTTCAGAAAAGCAAAGGGTTGCAAGGACTGTTGTATTTGGAGGTCTAATTAATGCTAAAATGGCTGAAGACGTTCATTGCCGTGCTCGAGACATAGGTCCTGTTTGTTTAGTGACTTATCCATTGCCAAAAGAAGAAATTCAGACACATGGTTTGTTACGGGATGGATGCAAAATGGATGCTTCAGCCGTGCTTTATGATAGTGTAAAGTCTGCTTGTGCTGCTGTTGCAATGTTACATCTGAAAGAAATTGGAGGGGGTACCATATGGGCCCGCCAACTGGGGGGTGAGGGTTCCAAAACTCAGAAATGGAAAATTATTGTCAGAAACCTTCCTTTCAAGGCCACAGAAAATGAAATAAAGAACACGTTTTCACCTGCTGGGTTTGTCTGGGACGTGTTCATTCCAAATAAATCTGACTCAGGATTGTCAAAGGGTTTTGCATTTGTGAAATTTACATGCAGACAAGATGTGGAGAATGCTATTAAACTGTTCAATGGTCAAACCTTTGGTAAAAGACCTATAGCTGTTGATTGGGCTGTTCCGAAGAAAATGTACAGCAATGGTGCTAATGCTACTCCGTTAGAAGATGAGGAATTGCATGAAAGCAACAGAGATGGCGTCAGTAGTAATGACAAATTGGAAGATGATCTGGAGGATTCTCAACAAAGCCCCCAGCATGCTGAAGTTAATTGTCTTCATGATGATCCAATAACAACCAAGAAAGACATCACTCTAAAAGAACTTAATTTTATAGAGGAAACAGACATGGCAAGAAAAGTTCTTAAGAACTTCATCTCACGATCAGCTGAAGAAACTATTCCTTCTGCTAGTTATGACAATGATCCAAATTCTGGTGAATGTAGTAGGGATTTACCTTCCAATTCATCTGTTGTTCATGTCAAAGTAGCAGCAGCAACCAACCCAAAAAAAGTAAATGAAAGTAAGCTGTTAGATCTTAAAGAGGTGGAGGATGATTTACAGAGAACAACTTTCATATGCAACCTTCCTTTTGAGGTCGAGGGTGAAGAAGTGAAACAAAGATTTTCTGGATTTGGTGAAGTTCTGTCGTTTGTCCCAGTTGTTCATCAAGTTACCAAGCGACCCAGAGGAACTGGTTTTCTCAAGTTTAAAACCATAGATGCAGCTAATGCTGCTATTGCAGCGGCAAAGTCTGAGTCGGGTTTGGGAATTTTTCTGAAAGGGAGACAATTGACAGTATTGAAGGCTTTGGATAAGAAATCAGCACATGACAAGGAATTGGAGAAGTCCAAGAATGACAGTCATGACCAGCGCAATCTTTACCTGGCCAAGGAAGGCCTAATTATTGCGGGAACCCCAGCTGCTGAAGGTGTTTCAGCTAGTGACATGATGAAACGGGAAAGGTTAGAGAAGAAAAAGGCGACTAAACTTGAATCTCCAAATTTTCATGTCTCAAGGACTAGACTTGTCATATACAATTTACCCGTTTCAATGGAAGAAAAGAAACTAAAGGAGCTTTGTATTAAAGCAGTTCTTTCCCGAGCTTCCAAGCAAAAGCCTGTGATTCGGCAGATGAAGTACGTAAAGGACACCAGGAAAGGAGATAGAGTGAAAAAGACCCAGAATCTTGGAGTTGCTTTTGTTGAGTTTTCTGAGCATCAGCATGCACTCGTCGCCCTGAGAGTTCTCAACAACAATCCTGAAACATTTGGACCTGCAAATCGTCCAATTGTTGAGTTTGCTGTTGATAATGTGCAAACATTGAAGCTAAGAAAGGCCAAGCTACAAGTTCAGTCGCAGGGTCCCCGTAAAGACCAAAAAAATGGCGATGCTCCTGATGTTCCTTTGCATGGGAAAGTGAAACCCAAGAAGTGGAAATCAATAGACGATGATAGGTCAAGGAAAAATCAAGTTTTGCATGAAGGTGAACAAGAAAGACTAGCTAATGAAGCTGCCACAGAAGGAGGCATTAGCACAAAGAGGCAAAAAACCAAACCAGAGAGCAGAAAGCTGGAGGAGTCTTCTCTGAAAACCAAGTCAAGAGAGAGAAAACAAAAGTTAGAAAGTTGGAGGCAACGAAATGCTGGATTGGGTGAAATGGCAGCTGCTGAGACTCATAAACCAGGATCCTTGGAGGGACGAGATGTACAACACAAAAAGAGGAAGCTGCATGAGGAAGTAGGACGAAGTAATGGAGAAGAAAACTTGAAGACCAGAAAAAGACCAAAGAAGAACAAGGAACCCGTAGGCAGAGACGTTGCAGATAGACTGGACATGCTCATTGAACAATACAAATCCAAGTTCTCACAGCCGAGTTACCGTGCAATCAGTGGTGCTATGAAAGATTCTGGACAAACGTTCTGTCCCGATTTTATTGGTGGGTGGATTGGTGTTGGACTGATGGCAGCTTCATGGAGTGCCAGCTCCCTGGTTTATGCCTATAAATGTGGAACTTGGGAGCTTAGCAATCGCACAAGTCTTCTACTTCAGAAAGAGAGTGAGTTGCTTGGTCTAGAAGGGGGAAGCTACTGTCTGGAGGGGAAGAGCTTGGGAGAGCTGCTGTTGCAGAGAGGAGCTTCAAGAGATGATATATTGCAGAGAAAGGTATGGGGTAATGCGTGTGTTTTGCCAGAGGTGGCCTACACCTCAGGGTTAGAATTGTTGTGA 3183 42.6 MSAAKREPLLSTPPQLFLFPTYPIPLPTNWLKKHLEMSDLLDGPSWLQKRDQLSIVVLVSSSCKFSAVVAPSVSFTVGFFSYVLPLSAIKEDANRAIELKNGSSVEGRKIAVKHAMQRAPLEQRRSKEKQVIPSKARNEKDGETSKSGKDASNLEEQVKLGKSTKASPVSRDLANKIGSSEKQRVARTVVFGGLINAKMAEDVHCRARDIGPVCLVTYPLPKEEIQTHGLLRDGCKMDASAVLYDSVKSACAAVAMLHLKEIGGGTIWARQLGGEGSKTQKWKIIVRNLPFKATENEIKNTFSPAGFVWDVFIPNKSDSGLSKGFAFVKFTCRQDVENAIKLFNGQTFGKRPIAVDWAVPKKMYSNGANATPLEDEELHESNRDGVSSNDKLEDDLEDSQQSPQHAEVNCLHDDPITTKKDITLKELNFIEETDMARKVLKNFISRSAEETIPSASYDNDPNSGECSRDLPSNSSVVHVKVAAATNPKKVNESKLLDLKEVEDDLQRTTFICNLPFEVEGEEVKQRFSGFGEVLSFVPVVHQVTKRPRGTGFLKFKTIDAANAAIAAAKSESGLGIFLKGRQLTVLKALDKKSAHDKELEKSKNDSHDQRNLYLAKEGLIIAGTPAAEGVSASDMMKRERLEKKKATKLESPNFHVSRTRLVIYNLPVSMEEKKLKELCIKAVLSRASKQKPVIRQMKYVKDTRKGDRVKKTQNLGVAFVEFSEHQHALVALRVLNNNPETFGPANRPIVEFAVDNVQTLKLRKAKLQVQSQGPRKDQKNGDAPDVPLHGKVKPKKWKSIDDDRSRKNQVLHEGEQERLANEAATEGGISTKRQKTKPESRKLEESSLKTKSRERKQKLESWRQRNAGLGEMAAAETHKPGSLEGRDVQHKKRKLHEEVGRSNGEENLKTRKRPKKNKEPVGRDVADRLDMLIEQYKSKFSQPSYRAISGAMKDSGQTFCPDFIGGWIGVGLMAASWSASSLVYAYKCGTWELSNRTSLLLQKESELLGLEGGSYCLEGKSLGELLLQRGASRDDILQRKVWGNACVLPEVAYTSGLELL 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28708115 28719119 + BLOR10543 Blo02g00813 57043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00813 1060 MobiDBLite consensus disorder prediction 157 176 - -
Blo02g00813 1060 MobiDBLite consensus disorder prediction 116 176 - -
Blo02g00813 1060 MobiDBLite consensus disorder prediction 778 820 - -
Blo02g00813 1060 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 590 IPR000504 GO:0003723
Blo02g00813 1060 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Blo02g00813 1060 CDD RRM4_RBM28_like 659 756 - -
Blo02g00813 1060 Gene3D - 658 753 IPR012677 -
Blo02g00813 1060 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 505 768 - -
Blo02g00813 1060 MobiDBLite consensus disorder prediction 373 401 - -
Blo02g00813 1060 SUPERFAMILY RNA-binding domain, RBD 507 737 IPR035979 GO:0003676
Blo02g00813 1060 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 353 IPR000504 GO:0003723
Blo02g00813 1060 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 510 568 IPR000504 GO:0003723
Blo02g00813 1060 SUPERFAMILY RNA-binding domain, RBD 90 268 IPR035979 GO:0003676
Blo02g00813 1060 Gene3D - 498 598 IPR012677 -
Blo02g00813 1060 MobiDBLite consensus disorder prediction 832 862 - -
Blo02g00813 1060 MobiDBLite consensus disorder prediction 766 923 - -
Blo02g00813 1060 MobiDBLite consensus disorder prediction 116 156 - -
Blo02g00813 1060 Gene3D - 269 390 IPR012677 -
Blo02g00813 1060 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 659 749 IPR000504 GO:0003723
Blo02g00813 1060 MobiDBLite consensus disorder prediction 880 923 - -
Blo02g00813 1060 PANTHER RNA BINDING PROTEIN 505 768 - -
Blo02g00813 1060 CDD RRM2_RBM28_like 283 359 - -
Blo02g00813 1060 SMART rrm1_1 283 356 IPR000504 GO:0003723
Blo02g00813 1060 SMART rrm1_1 508 586 IPR000504 GO:0003723
Blo02g00813 1060 SMART rrm1_1 660 752 IPR000504 GO:0003723
Blo02g00813 1060 PANTHER RNA BINDING PROTEIN 89 381 - -
Blo02g00813 1060 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 89 381 - -
Blo02g00813 1060 SUPERFAMILY RNA-binding domain, RBD 278 364 IPR035979 GO:0003676
Blo02g00813 1060 MobiDBLite consensus disorder prediction 368 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00813 K14573 NOP4, RBM28; nucleolar protein 4 - pvy:116132361 910.983
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00813 Blo04g00605 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00813 Blo-Chr2:28708115 Blo04g00334 Blo-Chr4:2632241 1.87E-07 dispersed
Blo02g00813 Blo-Chr2:28708115 Blo06g00757 Blo-Chr6:30832179 3.64E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g288 Blo02g00813 . . . . . . . . Cmo11g01784 . . . . . Cpe04g00629 . Bhi05g01586 Tan02g0578 . . . . . Cla02g00349 Cam02g0358 Cec02g0359 Cco02g0365 Clacu02g0350 Cmu02g0347 . Cone12ag1275 Cone8ag1328 . . Lsi10g00865 Csa07g00184 . Cme01g01149 Blo04g00605 . . Bda14g00646 Bpe15g00785 . . . Sed01g0685 . . Cma11g01335 . Car11g01411 . Cpe16g00265 . Bhi10g01176 Tan05g0810 Cmetu08g0460 . Hepe08g0513 . . . . . . . . . Lsi11g01283 . Chy01g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00813 Blo_Chr02 FPKM 7.405077 7.918068 12.999627 10.574167 15.89998 12.053741 18.768337 11.00139 13.17031 15.051882