Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00819 ATGATTGTCTTGACGCTCTCATTGGTCTGTGGTGTTTATATATGGTCAGTTTGTCTTAAACTAATCAGCACCAGCTCCATGGCCGGGTTTTTGAATGTTCAGGTCATTCAAATTCCATGTACAAAACCACAAATAGAACCATCTGAAGTTCCTTATGTGCATTTTCCAAAACCCCATACATATAACAGGGCCGAATGTGCATGCAACCCTGTTAGAAATTTTGCAATTTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACATTATTGAATAATCATACTAATATAAGTTCAAACGGGGAGATATTCTCTGTTAAAGTGAGGAGAAGTAACGTTTCAACTATTGTTGAAACGCTGGATAAGATTTACAATCTAGACTGGTTCAGTAGTGCCTCAAAAAATGAGTGCACGGCTGCAGTAGGCTTAAAGTGGATGCTTAATCAGGGTTTAATGCAAAACCATGAAGAAATAACAGAGTACTTCAGAAATCGAGGTGTATCAGTCATTTTCCTCTTCCGAAGAAATCTCCTTCGCAAAATGGTCTCGGTACTCGCAAATTCTTATGATCGTGACAATAAGCCGTTAAACGGAACTCACAAGTCTCACGTACATTCAGCCCAGGAGTTTACAATTCAAATGAGAAAAAGTAGTAGCTTTGTTCTTCTTGTTTTTTGCAGTAACTCGAAAAAATGGTTCGTCCAGGCCGAAATACTTGCAAAATACAAGCCGAAAATAAATGTCACATTGTTGGTTCCGGACATGAGACAACTAGAAGAGAAGACCATTAAGGCTATGGAGTATTTCAATAGTACCCGTCACATAATTTTATATTACGAGGATGTTGTTAGAAATCCGAATAAAATAATGAAAGTACAAGACTTTCTCAAGGTTCCGAGACGGGATTTGAAGAGTCGGCAAGTGAAGATTCACAGGGTCATTTCTGTGAAGGTTATACGCAACAAGCAAACTGCACAGTCTGAAGGCTATGGATTCATTGAATTTTATTCACACGCAACTGCTGAAAAGGTTCTGCAGAATTATAATGGTGCCATGATGCCAAATACAGAGCAACCTTTCCGTCTAAACTGGGCTACATTTAGTCCAAATGATAAGCGGACGGACAATAGCTCTGATTTATCTATATTTGTTGGTGATTTGGCCACAGATGTCACAGATTCTATGTTGCAAGAAACATTTTCGAGTAGATATCCATCTGTGAAGGGAGCAAAAGTTGTGATTGATGCAAATACTGGCCGTTCGAAAGGATATGGGTTTGTCAGGTTTAGCGATGAAAATGAGAGATCAAGGGCCATAGCCGAGATGAATGGCATGTATTGTTCGAGTAGGCCGATGCGGATTGGTGTTGCGACACCAAAGAAAGCAGCTGGATACCAACAAAGTTATTCCTCACAAGCATTCGTTTTGGTTGGTGGACATGCATGGAATGGTTCTGCAGCTCAAGGACCACAATTTGATGGCGAGGCAAATACAACAACTACTGCGGAGGATGCAATGCAAGTTTTGAACGGAACCATAATGGGTAAGCAGACAGTCCGTCTTTCTTGGGGTCGCAGCCCGGGAAATAAGCAGTACGCCGGAACAAGGGAATGCTTCGCAGAAACGGGATTGAAGCCCTGCACGAGTACAAACAATTCCGGGAAGCTCCATCATGGTCTTCTCGTCGTCGAAAACAATTCCCACATTTCTTCCAAGTATCTTCTCATCGTCGAAAACAATTCCCACATTTCTTCCAAGTATCTTCTCATCGTCGAAAACAATTTTCTCCTCTCGATTTCACCGTCTAGTTCTCATTACTATCTTCTCTTTCCTATTCCTGATTCATCTTGTCGTCTAGTGCTCATCACTTTTCGCAGAGGAAAACAATCTTTCCCTAAGCAGAACGACGATGTTCCGCTATGGACCATTGACGTTTCACAGCTGCACATCGTCTTTTTGCAGTTGAACATCGTCTTTCCGCAGTGGAACGTTGTTGTTCCCCCGCGAAAAATAATCTTTTAA 2022 41.44 MIVLTLSLVCGVYIWSVCLKLISTSSMAGFLNVQVIQIPCTKPQIEPSEVPYVHFPKPHTYNRAECACNPVRNFAILSMQRSGSGWFETLLNNHTNISSNGEIFSVKVRRSNVSTIVETLDKIYNLDWFSSASKNECTAAVGLKWMLNQGLMQNHEEITEYFRNRGVSVIFLFRRNLLRKMVSVLANSYDRDNKPLNGTHKSHVHSAQEFTIQMRKSSSFVLLVFCSNSKKWFVQAEILAKYKPKINVTLLVPDMRQLEEKTIKAMEYFNSTRHIILYYEDVVRNPNKIMKVQDFLKVPRRDLKSRQVKIHRVISVKVIRNKQTAQSEGYGFIEFYSHATAEKVLQNYNGAMMPNTEQPFRLNWATFSPNDKRTDNSSDLSIFVGDLATDVTDSMLQETFSSRYPSVKGAKVVIDANTGRSKGYGFVRFSDENERSRAIAEMNGMYCSSRPMRIGVATPKKAAGYQQSYSSQAFVLVGGHAWNGSAAQGPQFDGEANTTTTAEDAMQVLNGTIMGKQTVRLSWGRSPGNKQYAGTRECFAETGLKPCTSTNNSGKLHHGLLVVENNSHISSKYLLIVENNSHISSKYLLIVENNFLLSISPSSSHYYLLFPIPDSSCRLVLITFRRGKQSFPKQNDDVPLWTIDVSQLHIVFLQLNIVFPQWNVVVPPRKIIF 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29104384 29113106 - BLOR10549 Blo02g00819 57049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00819 673 Pfam Sulfotransferase domain 75 328 IPR000863 GO:0008146
Blo02g00819 673 CDD RRM2_SECp43_like 379 458 - -
Blo02g00819 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 302 IPR027417 -
Blo02g00819 673 SUPERFAMILY RNA-binding domain, RBD 309 372 IPR035979 GO:0003676
Blo02g00819 673 Gene3D - 366 472 IPR012677 -
Blo02g00819 673 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 380 459 IPR000504 GO:0003723
Blo02g00819 673 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 357 IPR000504 GO:0003723
Blo02g00819 673 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 382 452 IPR000504 GO:0003723
Blo02g00819 673 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 325 - -
Blo02g00819 673 SUPERFAMILY RNA-binding domain, RBD 380 529 IPR035979 GO:0003676
Blo02g00819 673 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 367 IPR000504 GO:0003723
Blo02g00819 673 Gene3D - 71 326 IPR027417 -
Blo02g00819 673 CDD RRM1_SECp43_like 313 368 - -
Blo02g00819 673 SMART rrm1_1 289 363 IPR000504 GO:0003723
Blo02g00819 673 SMART rrm1_1 381 455 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00819 - - - csv:101207076 458.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00819 Blo-Chr2:29104384 Blo13g00571 Blo-Chr13:27821133 1.20E-150 dispersed
Blo15g00732 Blo-Chr15:24275487 Blo02g00819 Blo-Chr2:29104384 1.10E-91 wgd
Blo02g00819 Blo-Chr2:29104384 Blo04g01043 Blo-Chr4:14412273 1.50E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033723 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00819 Blo_Chr02 FPKM 38.242008 40.661312 74.686913 59.804535 28.526443 22.920893 31.485826 56.841457 52.42255 79.774864