Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00825 ATGACAGAGAAGGAGAGTTTACATGTCGTAAAAACCACAACAACTGTTGATGAAGCATTGGAGGCCCTTGTGGAGAAGAGAATAACTGGGTTTCCAGTGATTGATGATGACTGGAATTTGGTTGGTGTTGTCTCAGATTATGATTTATTGGCACTTGATTCCATATCAGGTGGCTGTCAAAGTGACACAAACATGTTCCCAGACGTTGATAGTACCTGGAAAACGTTTAATGAGATTCAAAAACTACTCAGCAAGACGAACGGAAAAGTTGTTGGGGATTTGATGACACCAGCACCACTTGTGGTTCGGGAAACTACCAACCTCGAAGAGGCTGCAAGGTTGTTGCTGGAGACAAAATATCGTCGACTTCCTGTAGTAGACAGCGATGGCAGGCTGGTGGGAATCATCACCAGAGGAAATGTTGTTAGGGCTGCCCTACAGATTAAACGTGACACCGAGAAGTCGATTTGA 471 44.37 MTEKESLHVVKTTTTVDEALEALVEKRITGFPVIDDDWNLVGVVSDYDLLALDSISGGCQSDTNMFPDVDSTWKTFNEIQKLLSKTNGKVVGDLMTPAPLVVRETTNLEEAARLLLETKYRRLPVVDSDGRLVGIITRGNVVRAALQIKRDTEKSI 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29594451 29598800 - BLOR10555 Blo02g00825 57055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00825 156 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 1 153 - -
Blo02g00825 156 SUPERFAMILY CBS-domain pair 6 144 IPR046342 -
Blo02g00825 156 CDD CBS_pair_plant_CBSX 4 144 - -
Blo02g00825 156 SMART cbs_1 6 54 IPR000644 -
Blo02g00825 156 SMART cbs_1 98 146 IPR000644 -
Blo02g00825 156 Pfam CBS domain 91 144 IPR000644 -
Blo02g00825 156 Pfam CBS domain 6 51 IPR000644 -
Blo02g00825 156 ProSiteProfiles CBS domain profile. 95 152 IPR000644 -
Blo02g00825 156 ProSiteProfiles CBS domain profile. 1 63 IPR000644 -
Blo02g00825 156 Gene3D - 1 152 IPR046342 -
Blo02g00825 156 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC-LIKE 1 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00825 - - - zju:107427043 272.322
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00825 Blo04g00478 CCT
Blo02g00825 Blo04g00478 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00825 Blo-Chr2:29594451 Blo16g00401 Blo-Chr16:14568564 6.86E-84 dispersed
Blo04g00478 Blo-Chr4:3960653 Blo02g00825 Blo-Chr2:29594451 1.03E-83 transposed
Blo02g00825 Blo-Chr2:29594451 Blo04g01060 Blo-Chr4:15188524 2.70E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g383 Blo02g00825 . . . . . . . . Cmo11g01377 . . . . . Cpe04g00291 . Bhi05g01078 . . . . . . Cla02g00614 Cam02g0643 Cec02g0642 Cco02g0663 Clacu02g0647 Cmu02g0642 Cre02g0966 . . Cone3ag0986 Cone10ag1004 . Csa07g00746 . Cme01g00062 Blo04g00478 . . Bda14g00508 Bpe15g00904 . Bma03g00510 . . . . Cma11g01738 . . . Cpe14g00288 Cpe01g00430 . . . . . . . . . . . . . . . . Chy01g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000579 5 3 4 3 4 3 5 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 8 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00825 Blo_Chr02 FPKM 125.11869 140.630386 37.480175 39.413853 375.246552 314.967072 363.99054 8.055861 9.941256 7.186363