Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00829 ATGAAAGGTAAGAGCAGTGCCATTAATTCACTTCCTGAAATTGTGAATATTGGGCAAGGATCTGTTTCCAGTACTGCTGTAATGAGTCAGCAAAATGTTCCAGCTAATGTTACTCCTGTGGAAAACCGGTTGTCAAATTATATGATCTCATCTGATGAAACATGTACCCATTCTGCTAGTCATGGTGCTCAGAGCTTTGATGGTTGTTATTCTGATGAATCTAGTTACAGGATTAATTTGCAGAATGATATAGACAATGAACTGCTAAAAAGGGAGCATTTTTGGTCTCCCTTAAATGCCTCTTCTGGGAATAGCCCAGAAGAGAGACAACTAGGGGCATCTAACTCCTTTTTTCGTGGGAGAACTGATTTTGGGTCCAGTAAATATGAAATTAGAGACAGGCCATTGTTTTCACAAGGTTCGACCTCCAATGTTACTTATCATAATGAAAGTCCAGATGCTGAGTATGTTGGAAATAGCAACATAGGCAGGCTTGAAGTTGGATCTGGTTGTTCTAATTCATACAAGTCAAGTCAATCAGAAATAGGGCAAACTTCTTCTGTTTCCTTTTGTCGGAATTCATTTGGAGACACTCATAATATGATAGTGGAAAATGATGGTGGGCCCAGTTCTTCAGGTTCATGGGGATTGTCCTGCAAGAGAAAAGCCCTTGAAGGAACTTCCAGGCAATTTTGTTCTGGTGGAAGTTCTGGCTCCTTCCCACAGCCAGAACAGGATATATTACGCACTGGCACTGCTTTTTCTGTACCTTCTAGCAGTTTAAGATTATCCCCTCCTGCTCAGGTATCTCATTGCACTGGTCTTCCTGAGCTGCAGAACTCAAGCATTAGTGCTAGTGGAATGAAAACAGTTTCTGATGTCTACACTTCTTCAAGTGTTACGAATAATTTTGAGAGATCTTTGAGTGATTTGGGAAGAATGGCTGCTTTGAGGACTTCACAGGACTATGTGCCATTTAGTATATTATCTGCCGGAATCGCAAGGCACCAAAGCCCCCCTTCATTTAGAGATTCTGTGGAGAGATCATCAGCAATTTCAGCTGTCAGCTCAGGAGGAACCCAAGGACTTTCTCATGGTAATGAAGTTCCTGGGATTTCGAGATGTTCTCATCCTTTCACCTGGGATGGGGGTTGCACTTCAAGAGTCGAAAGCTTGTCAAGTTTATCTGGACATGGAAGTCTACATGAAGACTTAAATCTAGGTTGTTATTCACGAAACAATACAGAGTATCACGTAGTTTTACCGGCAACTGAGACAAGAAACTCAACTCATGATTCAACTAGCTGGAGTTTAGGACTTGGAAACGTAAGCAATTCATTTTGCAGTCCTTCTACTTCTCAAACTAGCCCTAGTTCTAGCATTTGTTCTTTACCAAATCCAGCATTAATTTCACCCAACCCTCCTAGAGAAAATCCAGGAAGGTTGTTAGAATTCACACCTTGGTCTTTGTTTCCTTCTACTGATGCTGAATCTGGAGTTCCTAGTGGTCACTTTTATCCATCACCTGTAGCTCCTGCTTCTGCTCGGGATGCAACTCTGTCATCTGCACCTAATAGCCATAGGTATCATCAATCTTATCCTAGGTCTGCGTACTTTCTGGAGAGACTGGGTGATGATATTTCAGGTACTACACATTCATTACGCACTTTAGCTGCTCACACTGAGGGCAGGCGCCAACTAATATCTGAGATTCGCCAAGTCTTGACTGTCATGCAAAGGGCTGAAAACTTGGCAGCTGAGGATCATATGTTGTTTGACCCATTCATATACCATGGTATGGCTGAGATTCATGATAGGCATAGGGACATGCGCCTCGATGTTGACAACATGTCCTATGAGGAATTGTTGGCACTAGAAGATCGCATAGGAGATGTTAGCACAGGACTTAGTGAAGATGTGATTTTGAAGATCTTGAAACAACAAAAGTACGAGTTACTCAAAACGCCAACTCCTCCAGATTTGGAACCCTGCTGCATCTGTAAGCGGTCAAAATTACAGGAGGAATATGCTGATGCCGATATTGTTGGGACGTTAGATTGTGGGCACAATTTCCATTCCAACTGTATCAAGCAGTGGCTTGTGCTGAAGAACCTGTGTCCCATTTGTAAAACAACAGCCTTGCCTAAATGA 2151 42.35 MKGKSSAINSLPEIVNIGQGSVSSTAVMSQQNVPANVTPVENRLSNYMISSDETCTHSASHGAQSFDGCYSDESSYRINLQNDIDNELLKREHFWSPLNASSGNSPEERQLGASNSFFRGRTDFGSSKYEIRDRPLFSQGSTSNVTYHNESPDAEYVGNSNIGRLEVGSGCSNSYKSSQSEIGQTSSVSFCRNSFGDTHNMIVENDGGPSSSGSWGLSCKRKALEGTSRQFCSGGSSGSFPQPEQDILRTGTAFSVPSSSLRLSPPAQVSHCTGLPELQNSSISASGMKTVSDVYTSSSVTNNFERSLSDLGRMAALRTSQDYVPFSILSAGIARHQSPPSFRDSVERSSAISAVSSGGTQGLSHGNEVPGISRCSHPFTWDGGCTSRVESLSSLSGHGSLHEDLNLGCYSRNNTEYHVVLPATETRNSTHDSTSWSLGLGNVSNSFCSPSTSQTSPSSSICSLPNPALISPNPPRENPGRLLEFTPWSLFPSTDAESGVPSGHFYPSPVAPASARDATLSSAPNSHRYHQSYPRSAYFLERLGDDISGTTHSLRTLAAHTEGRRQLISEIRQVLTVMQRAENLAAEDHMLFDPFIYHGMAEIHDRHRDMRLDVDNMSYEELLALEDRIGDVSTGLSEDVILKILKQQKYELLKTPTPPDLEPCCICKRSKLQEEYADADIVGTLDCGHNFHSNCIKQWLVLKNLCPICKTTALPK 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29905024 29914171 + BLOR10559 Blo02g00829 57059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00829 716 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 714 - -
Blo02g00829 716 CDD RING-H2_TTC3 663 710 - -
Blo02g00829 716 SUPERFAMILY RING/U-box 663 714 - -
Blo02g00829 716 Pfam Ring finger domain 664 710 IPR001841 -
Blo02g00829 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 714 IPR013083 -
Blo02g00829 716 ProSiteProfiles Zinc finger RING-type profile. 664 710 IPR001841 -
Blo02g00829 716 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 714 IPR045191 GO:0061630
Blo02g00829 716 SMART ring_2 664 709 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00829 - - - qsu:112033740 592.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00829 Blo15g00751 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00829 Blo-Chr2:29905024 Blo18g00646 Blo-Chr18:11570892 6.00E-62 dispersed
Blo15g00752 Blo-Chr15:25514105 Blo02g00829 Blo-Chr2:29905024 0 transposed
Blo17g00874 Blo-Chr17:28800371 Blo02g00829 Blo-Chr2:29905024 1.12E-73 transposed
Blo15g00751 Blo-Chr15:25503272 Blo02g00829 Blo-Chr2:29905024 2.22E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g391 Blo02g00829 Blo15g00751 . . . . . Bma12g00439 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1184 Cone10ag0997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015397 4 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 11
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00829 Blo_Chr02 FPKM 101.820023 113.721771 9.356544 9.30651 0.0 0.0 0.315423 5.056844 4.703954 4.369095