Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00835 ATGCATGTCTTGGCGCGATTGCTTGCACATTTGCATCAAAGAACGAATGATCGAATTGTCCTTGTCTCAAACTACACTCAGACACTGGATTTATTTGCTCAATTATGTCGTGAAAGGAGATATCCTTTCTTGAGGCTTGATGGGACCACATCTATCAGTAAACGGCAAAAGTTGGTCAATAGTTTTAACGACTTAGCAAAGGATGAGTTTATTTTTCTCCTAAGCAGCAAGGCTGGTGGCTGCGGCTTAAATTTGATTGGTGGGAATAGACTAGTATTGTTTGATCCAGACTGGAATCCTGCCAATGATAAACAAGCAGCAGCAAGAGTCTGGAGAGATGGACAAAAGAAGAGAGTTTACATTTACCGATTTTTGAGTACTGGAACAATTGAAGAAAAGGTGTACCAGCGTCAGATGTCAAAAGAAGGGCTCCAAAATGTTATTCAAGCGGATCAGTCAAAGAGTTCTACTAACCAAGTGAATTTTCTTTCCATAGAAGATCTACGTGATCTATTTTCATTTCACGATACTGTGAGGTCTGAAATCCATGAAAACATGAACTGCGTCCGTTGCCAGAATTGCAATGATATGGTTGAGGACACAGACAAAAACCAAATAATGAACGAAATTTGTCAATCTGACCAAGAGTCCTCTGACATTGGTGGATTTGCAGAACTTGCGGGATGCTTACATAAGTTGAAAAGCTCAGAAAAACAGGTAGGGACACCGCTTGAAGAAGATTTATGTAGCTGGGGACATCATTTTTGCCCAACTTCAGTACCTGATGCTATTCTCCAAGCATCTGCAGGCGATGAGGTGACATTTGTATTCTCGAACCAAGTTGATGGGAAGCTTGTACCTATTGAATCAGCGGCAAGTGCAAAGAAACGGAAAGGCGAGGACTGTATGAAGAAAATGAAGGATCACCAGAACCAAAAATCATTGTCAGTTTCTGTGCATAGAAAACCTTTACATCCAGTTTGTACTAATAGCACTTATAATTGA 1005 40.5 MHVLARLLAHLHQRTNDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGTTSISKRQKLVNSFNDLAKDEFIFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQNVIQADQSKSSTNQVNFLSIEDLRDLFSFHDTVRSEIHENMNCVRCQNCNDMVEDTDKNQIMNEICQSDQESSDIGGFAELAGCLHKLKSSEKQVGTPLEEDLCSWGHHFCPTSVPDAILQASAGDEVTFVFSNQVDGKLVPIESAASAKKRKGEDCMKKMKDHQNQKSLSVSVHRKPLHPVCTNSTYN 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30365116 30368467 + BLOR10565 Blo02g00835 57065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00835 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 199 IPR027417 -
Blo02g00835 334 Pfam Helicase conserved C-terminal domain 5 113 IPR001650 -
Blo02g00835 334 Gene3D - 1 281 IPR027417 -
Blo02g00835 334 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 1 310 - -
Blo02g00835 334 SMART helicmild6 30 114 IPR001650 -
Blo02g00835 334 PANTHER SNF2/RAD54 FAMILY MEMBER 1 310 - -
Blo02g00835 334 CDD SF2_C_SNF 1 125 - -
Blo02g00835 334 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 3 161 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00835 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:101218846 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00835 Blo-Chr2:30365116 Blo02g00068 Blo-Chr2:464305 2.08E-32 dispersed
Blo02g00835 Blo-Chr2:30365116 Blo05g00528 Blo-Chr5:9820584 7.87E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g427 Blo02g00835 . . . . . Bma05g00518 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1099 . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00442 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009997 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00835 Blo_Chr02 FPKM 0.0 0.0 0.719632 0.0 0.0 0.890762 1.01862 0.0 0.357381 0.0