Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00838 ATGGAGCTTCTGGTTCTTTCTGCTCTTCAATGGCGGATGCATCCAGTAACTCCATATTCATTTATAGATCTCATCGCCAGGAAGATAGGATTAAAGACCAATTTATATTATGAATTTCTTAGTCTTTTCGATTGCCTTCTTCTCTCACTACTCGCAGATTCAAGATCTGTGAGTTATCTTCCTTCTGTCATTGCTGCCGCTGCAATGGTGAGAGTTTTAGACGAGATAGAGCCCTGTAAATCAATGGATTACACGAATCAAATTCTTGGTATTCTTAAAATAAGCAAAGAAAATTCAAATGCCTGTTATAGTCTGATACTTGAGCTGTCGAACGCCAATTTCAATGGCGGTAAAACCTCTGTGGGGAGAAGATTCTATCAAGTTCCAGAGAGCCCAAATGGAGTCGCCGATGCTGTTTTTACCTCCGACTGCTTTAATGATTCCTGGTCTGTGCCTTCTTCTCCTGTTTCTCCTCTCGTAGAACCGCCATTAAAGAAGAGCAGAGCTCAAAATAAGAAGGCGAAATTTCCATCCTTGGTTACTTGA 546 41.03 MELLVLSALQWRMHPVTPYSFIDLIARKIGLKTNLYYEFLSLFDCLLLSLLADSRSVSYLPSVIAAAAMVRVLDEIEPCKSMDYTNQILGILKISKENSNACYSLILELSNANFNGGKTSVGRRFYQVPESPNGVADAVFTSDCFNDSWSVPSSPVSPLVEPPLKKSRAQNKKAKFPSLVT 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30947685 30948403 + BLOR10568 Blo02g00838 57068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00838 181 Pfam Cyclin, C-terminal domain 16 126 IPR004367 -
Blo02g00838 181 Gene3D - 1 121 - -
Blo02g00838 181 PANTHER CYCLINS 1 167 IPR039361 -
Blo02g00838 181 SMART Cyclin_C_2 16 143 IPR004367 -
Blo02g00838 181 PANTHER CYCLIN D3.1 PROTEIN 1 167 - -
Blo02g00838 181 MobiDBLite consensus disorder prediction 152 181 - -
Blo02g00838 181 SUPERFAMILY Cyclin-like 17 123 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00838 K14505 CYCD3; cyclin D3, plant - qsu:112038380 174.096
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00838 Blo15g00710 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00838 Blo-Chr2:30947685 Blo19g00213 Blo-Chr19:10612923 1.18E-66 dispersed
Blo05g00010 Blo-Chr5:118989 Blo02g00838 Blo-Chr2:30947685 6.23E-29 transposed
Blo02g00838 Blo-Chr2:30947685 Blo04g01071 Blo-Chr4:15393536 8.72E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003809 3 1 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00838 Blo_Chr02 FPKM 2.508314 4.627821 1.049142 0.725275 1.186683 0.187472 0.0 0.254423 0.269103 0.227169