Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00865 ATGTCATTCCGTAGCCTAGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCTAGGCGAGGATTTGAGGTCCGGCTGACTGGCCATAACCGAGGTAAATCATACGGTTCTTTCCATGATTTGCACGATCAGCCTCTCATGGTTCAGAGCAGTTGCTGGGCCAACCTTCCACCCGAGCTGCTCTATGATGTCATCCGGAGACTGGAGGAAAGCGAAAGCACTTGGCCTTCGCGTAAGAATGTCATTGCTTGTGCTGCAGTTTGCCGTTCTTGGAGAAACATGTGCAAAGAATTGGTTAAAAATCCTGAGATTTGTGGGAAGCTTACCTTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACATACCACCTCTATCTATCTTTGCTAGTTGAAAACGGGAAATTTCTTCTTTCTGCAAAACGAACACGAAGAACAACTAGCACTGAGTATGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGCACCTATATTGGAAAACTAAGGTCAAATTTTCTTGGTACAAAGTTCATCATATACGACACTCAACCTCCATACACAGATGCTGCCGTTCCTTCGCCCAGTAAAACAAGTCGAAGATTCTACTCAAAAAAGGTCTCCCCAAAAGTCCCTAGCGGAAGCTACAACATTGCCCAAATAACCTACGAACTAAACGTGTTGGGCACTCGAGGCCCGCGAAGAATGCATTGTGTGATGCATTCGATCCCACTTTCGTCTCTCGATGCAGGCGGGTTTGTACCTGGACAGCCGGAGCTCCTCCCACGCACGCTCGAAGACTCGTTCCGGAGCATCTCCTTCTCCAAGTCTCTCGATTATTCCATGGAGTTCAGCAGCTCCAGATTCTCCGAAATCGGCAGACGTGTTGACGGCGATGAGGAGGAAAAGATGGTTATACCCTTGGTGTTGAAAAACAAGCCGCCTAGATGGCACGAGCAGTTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACTGTTGCTTCCGTGAAGAACTTTCAGTTGATTGCAGCCCCACAGACAGTGGCGGGAGCTCCAGCGCCATCTCAGCCGACCCCTCCAGAGTATGATAAGATAATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTTACAATGGATTATCGCTATCCGTTATCGGCTTTTCAGGCTTTCGCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1269 47.99 MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNRGKSYGSFHDLHDQPLMVQSSCWANLPPELLYDVIRRLEESESTWPSRKNVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLSLLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTDAAVPSPSKTSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMHCVMHSIPLSSLDAGGFVPGQPELLPRTLEDSFRSISFSKSLDYSMEFSSSRFSEIGRRVDGDEEEKMVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAPQTVAGAPAPSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33067374 33070222 - BLOR10595 Blo02g00865 57095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00865 422 SUPERFAMILY F-box domain 47 97 IPR036047 GO:0005515
Blo02g00865 422 Pfam Tub family 114 417 IPR000007 -
Blo02g00865 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Blo02g00865 422 Gene3D - 48 101 - -
Blo02g00865 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Blo02g00865 422 PRINTS Tubby superfamily signature 231 258 IPR000007 -
Blo02g00865 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Blo02g00865 422 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Blo02g00865 422 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Blo02g00865 422 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Blo02g00865 422 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Blo02g00865 422 Gene3D Tubby Protein; Chain A 110 422 IPR025659 -
Blo02g00865 422 PANTHER TUBBY-RELATED 1 422 - -
Blo02g00865 422 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Blo02g00865 422 SUPERFAMILY Tubby C-terminal domain-like 102 422 IPR025659 -
Blo02g00865 422 Pfam F-box domain 53 100 IPR001810 GO:0005515
Blo02g00865 422 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01728 Blo-Chr1:57017987 Blo02g00865 Blo-Chr2:33067374 0 dispersed
Blo02g00865 Blo-Chr2:33067374 Blo12g00786 Blo-Chr12:26257209 0 dispersed
Blo06g00639 Blo-Chr6:29392581 Blo02g00865 Blo-Chr2:33067374 5.21E-12 transposed
Blo10g00732 Blo-Chr10:22992816 Blo02g00865 Blo-Chr2:33067374 2.06E-123 transposed
Blo13g00300 Blo-Chr13:15994859 Blo02g00865 Blo-Chr2:33067374 0 transposed
Blo15g00775 Blo-Chr15:26557088 Blo02g00865 Blo-Chr2:33067374 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12046 PF01167 Tub 1.40E-116 CL0395 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00865 K19600 - jre:109007061 735.717